Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach-Reference-Cited by-同舟云学术

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Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach

Published:2017-05-21 Issue:14 Volume:26 Page:3700-3714
ISSN:0962-1083
Container-title:Molecular Ecology
language:en
Short-container-title:Mol Ecol

Author:

Fariello María Inés¹²³,Boitard Simon¹,Mercier Sabine⁴⁵,Robelin David¹,Faraut Thomas¹,Arnould Cécile⁶,Recoquillay Julien⁷⁸,Bouchez Olivier¹⁹,Salin Gérald¹⁹,Dehais Patrice¹⁰,Gourichon David¹¹,Leroux Sophie¹,Pitel Frédérique¹,Leterrier Christine⁶,SanCristobal Magali¹⁵¹²¹³

Affiliation:

1. INRA, INPT, INP-ENVT, UMR1388, GenPhySE; Université de Toulouse; Castanet-Tolosan France

2. Facultad de Ingeniería; Universidad de la República; Montevideo Uruguay

3. Institut Pasteur; Unidad de Bioinformática; Montevideo Uruguay

4. Département Mathématique-Informatique, UFR SES; Université de Toulouse II; Toulouse Cedex 09 France

5. UMR5219, Institut de Mathématiques; Université de Toulouse; Toulouse France

6. Unité de Physiologie de la Reproduction et des Comportements, UMR INRA - CNRS; Université de Tours; Tours France

7. UR83 Recherches Avicoles; INRA; Tours Nouzilly France

8. Hubbard; Châteaubourg; France

9. GeT-PlaGe Genotoul; INRA; Castanet-Tolosan France

10. SIGENAE; INRA; Castanet-Tolosan France

11. UE1295 Pôle d'Expérimentation Avicole de Tours; Tours Nouzilly France

12. Département de Génie Mathématiques; INSA; Toulouse Cedex 4 France

13. UMR 1201 Dynafor; INRA - INP Toulouse; Castanet-Tolosan France

Funder

Institut National de la Recherche Agronomique

Agencia Nacional de Investigación e Innovación

Region Midi Pyrenees, France

Universidad de la República Uruguay

Agence Nationale de la Recherche

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1111/mec.14141/fullpdf

Reference47 articles.

1. Identifying adaptive genetic divergence among populations from genome scans;Beaumont;Molecular Ecology,2004

2. Genome-wide comparison of Africanancestry populations from CARe and other cohorts reveals signals of natural selection;Bhatia;American Journal of Human Genetics,2011

3. Uncovering adaptation from sequence data: Lessons from genome resequencing of four cattle breeds;Boitard;Genetics,2016

4. Pool-hmm: A Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples;Boitard;Molecular Ecology Resources,2013

5. Detecting selective sweeps: A new approach based on hidden markov models;Boitard;Genetics,2009

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