Geography and ecology shape the phylogenetic composition of Amazonian tree communities

Author:

Luize Bruno Garcia1ORCID,Bauman David234,ter Steege Hans56,Palma‐Silva Clarisse1,do Amaral Iêda Leão7,de Souza Coelho Luiz7,de Almeida Matos Francisca Dionízia7,de Andrade Lima Filho Diógenes7,Salomão Rafael P.89,Wittmann Florian1011,Castilho Carolina V.12,de Jesus Veiga Carim Marcelo13,Guevara Juan Ernesto1415ORCID,Phillips Oliver L.16,Magnusson William E.17,Sabatier Daniel2,Revilla Juan David Cardenas7,Molino Jean‐François2,Irume Mariana Victória7,Martins Maria Pires7,da Silva Guimarães José Renan18,Ramos José Ferreira7,Bánki Olaf S.5,Piedade Maria Teresa Fernandez11,López Dairon Cárdenas19,Pitman Nigel C. A.20,Demarchi Layon O.11,Schöngart Jochen11,de Leão Novo Evlyn Márcia Moraes21,Vargas Percy Núñez22,Silva Thiago Sanna Freire23,Venticinque Eduardo Martins24,Manzatto Angelo Gilberto25,Reis Neidiane Farias Costa26,Terborgh John2728ORCID,Casula Katia Regina26,Honorio Coronado Euridice N.2930ORCID,Mendoza Abel Monteagudo2231,Montero Juan Carlos732,Costa Flávia R. C.17,Feldpausch Ted R.1633,Quaresma Adriano Costa11,Arboleda Nicolás Castaño19,Zartman Charles Eugene7,Killeen Timothy J.34,Marimon Beatriz S.35,Marimon‐Junior Ben Hur35,Vasquez Rodolfo31,Mostacedo Bonifacio36,Assis Rafael L.37,Baraloto Chris38,do Amaral Dário Dantas9,Engel Julien238,Petronelli Pascal39,Castellanos Hernán40,de Medeiros Marcelo Brilhante41,Simon Marcelo Fragomeni41,Andrade Ana42,Camargo José Luís42,Laurance William F.28,Laurance Susan G. W.28,Rincón Lorena Maniguaje7,Schietti Juliana7,Sousa Thaiane R.43,de Sousa Farias Emanuelle4445,Lopes Maria Aparecida46,Magalhães José Leonardo Lima4748,Nascimento Henrique Eduardo Mendonça7,de Queiroz Helder Lima49,Aymard C Gerardo A.50,Brienen Roel16,Stevenson Pablo R.51ORCID,Araujo‐Murakami Alejandro52,Cintra Bruno Barçante Ladvocat53,Baker Tim R.16,Feitosa Yuri Oliveira54,Mogollón Hugo F.55,Duivenvoorden Joost F.56,Peres Carlos A.57,Silman Miles R.58,Ferreira Leandro Valle9,Lozada José Rafael59,Comiskey James A.6061,de Toledo José Julio62,Damasco Gabriel63,Dávila Nállarett1,Draper Freddie C.64,García‐Villacorta Roosevelt6566,Lopes Aline67,Vicentini Alberto17,Valverd Fernando Cornejo68,Alonso Alfonso61,Arroyo Luzmila52,Dallmeier Francisco61,Gomes Vitor H. F.6970ORCID,Jimenez Eliana M.71,Neill David72,Mora Maria Cristina Peñuela73,Noronha Janaína Costa74,de Aguiar Daniel P. P.7576,Barbosa Flávia Rodrigues76,Bredin Yennie K.77,de Sá Carpanedo Rainiellen74,Carvalho Fernanda Antunes1778,de Souza Fernanda Coelho1617,Feeley Kenneth J.7980,Gribel Rogerio7,Haugaasen Torbjørn77,Hawes Joseph E.77ORCID,Pansonato Marcelo Petratti781,Paredes Marcos Ríos82,de Jesus Rodrigues Domingos74,Barlow Jos83,Berenguer Erika8384,da Silva Izaias Brasil85,Ferreira Maria Julia86,Ferreira Joice48,Fine Paul V. A.87,Guedes Marcelino Carneiro88,Levis Carolina88,Licona Juan Carlos32,Zegarra Boris Eduardo Villa89,Vos Vincent Antoine90,Cerón Carlos91,Durgante Flávia Machado1011,Fonty Émile292,Henkel Terry W.93,Householder John Ethan10,Huamantupa‐Chuquimaco Isau94,Silveira Marcos95,Stropp Juliana96ORCID,Thomas Raquel97,Daly Doug98,Millike William99,Molina Guido Pardo90,Pennington Toby33100,Vieira Ima Célia Guimarães9,Albuquerque Bianca Weiss11,Campelo Wegliane62,Fuentes Alfredo101102,Klitgaard Bente103,Pena José Luis Marcelo104,Tello J. Sebastián102,Vriesendorp Corine20,Chave Jerome105,Di Fiore Anthony106107,Hilário Renato Richard62,de Oliveira Pereira Luciana33,Phillips Juan Fernando108,Rivas‐Torres Gonzalo107109,van Andel Tinde R.3110,von Hildebrand Patricio111,Balee William112,Barbosa Edelcilio Marques7,de Matos Bonates Luiz Carlos7,Doza Hilda Paulette Dávila82,Gómez Ricardo Zárate113,Gonzales Therany114,Gonzales George Pepe Gallardo82,Hoffman Bruce115,Junqueira André Braga116,Malhi Yadvinder117,de Andrade Miranda Ires Paula7,Pinto Linder Felipe Mozombite82,Prieto Adriana118,Rudas Agustín118,Ruschel Ademir R.48,Silva Natalino119,Vela César I. A.120,Zent Stanford121,Zent Egleé L.121,Cano Angela51122ORCID,Márquez Yrma Andreina Carrero123,Correa Diego F.51124,Costa Janaina Barbosa Pedrosa88,Flores Bernardo Monteiro125,Galbraith David16,Holmgren Milena126,Kalamandeen Michelle127,Lobo Guilherme128,Montenegro Luis Torres129,Nascimento Marcelo Trindade130,Oliveira Alexandre A.81,Pombo Maihyra Marina7,Ramirez‐Angulo Hirma131,Rocha Maira11,Scudeller Veridiana Vizoni132,Umaña Maria Natalia133ORCID,van der Heijden Geertje134,Torre Emilio Vilanova131135,Reategui Manuel Augusto Ahuite136,Baider Cláudia82137,Balslev Henrik138,Cárdenas Sasha51,Casas Luisa Fernanda51,Farfan‐Rios William2258,Ferreira Cid7,Linares‐Palomino Reynaldo61,Mendoza Casimiro139140,Mesones Italo87,Parada Germaine Alexander52,Torres‐Lezama Armando131,Giraldo Ligia Estela Urrego141,Villarroel Daniel52142,Zagt Roderick143,Alexiades Miguel N.144,de Oliveira Edmar Almeida35,Garcia‐Cabrera Karina58,Hernandez Lionel40,Cuenca Walter Palacios145,Pansini Susamar26,Pauletto Daniela146,Arevalo Freddy Ramirez147,Sampaio Adeilza Felipe26,Valderrama Sandoval Elvis H.147148,Gamarra Luis Valenzuela31,Dexter Kyle G.102149ORCID

Affiliation:

1. Departamento de Biologia Vegetal Instituto de Biologia, Universidade Estadual de Campinas – UNICAMP Campinas Brazil

2. AMAP, Université de Montpellier, CIRAD, CNRS, INRAE, IRD Montpellier France

3. Environmental Change Institute, School of Geography and the Environment University of Oxford Oxford UK

4. Laboratoire d'Ecologie végétale et Biogéochimie Université libre de Bruxelles Brussels Belgium

5. Naturalis Biodiversity Center Leiden The Netherlands

6. Quantitative Biodiversity Dynamics Utrecht University Utrecht The Netherlands

7. Coordenação de Biodiversidade Instituto Nacional de Pesquisas da Amazônia – INPA, Av André Araújo Manaus Brazil

8. Programa Professor Visitante Nacional Sênior na Amazônia – CAPES Universidade Federal Rural da Amazônia Belém Brazil

9. Coordenação de Botânica, Museu Paraense Emílio Goeldi Belém Brazil

10. Wetland Department Institute of Geography and Geoecology, Karlsruhe Institute of Technology – KIT Rastatt Germany

11. Ecology, Monitoring and Sustainable Use of Wetlands (MAUA) Instituto Nacional de Pesquisas da Amazônia – INPA Manaus Brazil

12. Centro de Pesquisa Agroflorestal de Roraima Boa Vista Brazil

13. Departamento de Botânica Instituto de Pesquisas Científicas e Tecnológicas do Amapá – IEPA Macapá Brazil

14. Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud‐BIOMAS Universidad de las Américas Quito Ecuador

15. Keller Science Action Center Chicago Illinois USA

16. School of Geography University of Leeds Leeds UK

17. Coordenação de Pesquisas em Ecologia Instituto Nacional de Pesquisas da Amazônia – INPA Manaus Brazil

18. Amcel Amapá Florestal e Celulose SA Santana Brazil

19. Herbario Amazónico Colombiano Instituto SINCHI Bogotá DC Colombia

20. Science and Education Chicago Illinois USA

21. Divisão de Sensoriamento Remoto – DSR Instituto Nacional de Pesquisas Espaciais – INPE São José dos Campos Brazil

22. Herbario Vargas Universidad Nacional de San Antonio Abad del Cusco Cusco Peru

23. Biological and Environmental Sciences University of Stirling Stirling UK

24. Centro de Biociências, Departamento de Ecologia Universidade Federal do Rio Grande do Norte Natal Brazil

25. Departamento de Biologia Universidade Federal de Rondônia Porto Velho Brazil

26. Programa de Pós‐ Graduação em Biodiversidade e Biotecnologia PPG‐ Bionorte Universidade Federal de Rondônia Porto Velho Brazil

27. Department of Biology and Florida Museum of Natural History University of Florida Gainesville Florida USA

28. Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering James Cook University Cairns Queensland Australia

29. Instituto de Investigaciones de la Amazonía Peruana (IIAP) Iquitos Peru

30. School of Geography and Sustainable Development University of St Andrews St Andrews UK

31. Jardín Botánico de Missouri Oxapampa Peru

32. Instituto Boliviano de Investigacion Forestal Santa Cruz Bolivia

33. Geography, College of Life and Environmental Sciences University of Exeter Exeter UK

34. Agteca‐Amazonica Santa Cruz Bolivia

35. Programa de Pós‐Graduação em Ecologia e Conservação Universidade do Estado de Mato Grosso Nova Xavantina Brazil

36. Facultad de Ciencias Agrícolas Universidad Autónoma Gabriel René Moreno Santa Cruz Bolivia

37. Natural History Museum University of Oslo Oslo Norway

38. International Center for Tropical Botany (ICTB) Department of Biological Sciences Florida International University Miami Florida USA

39. Cirad UMR Ecofog, AgrosParisTech, CNRS, INRAE, Univ Guyane Kourou Cedex France

40. Centro de Investigaciones Ecológicas de Guayana Universidad Nacional Experimental de Guayana Ciudad Bolívar Venezuela

41. Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Prédio da Botânica e Ecologia Brasilia Brazil

42. Projeto Dinâmica Biológica de Fragmentos Florestais Instituto Nacional de Pesquisas da Amazônia – INPA Manaus Brazil

43. Programa de Pós‐Graduação em Ecologia Instituto Nacional de Pesquisas da Amazônia – INPA Manaus Brazil

44. Laboratório de Ecologia de Doenças Transmissíveis da Amazônia (EDTA) Instituto Leônidas e Maria Deane Manaus Brazil

45. Programa de Pós‐graduação em Biodiversidade e Saúde Instituto Oswaldo Cruz – IOC/FIOCRUZ Rio de Janeiro Brazil

46. Instituto de Ciências Biológicas Universidade Federal do Pará Belém Brazil

47. Programa de Pós‐Graduação em Ecologia Universidade Federal do Pará Belém Brazil

48. Empresa Brasileira de Pesquisa Agropecuária, Embrapa Amazônia Oriental Belém Brazil

49. Diretoria Técnico‐Científica Instituto de Desenvolvimento Sustentável Mamirauá Tefé Brazil

50. Programa de Ciencias del Agro y el Mar Herbario Universitario (PORT), UNELLEZ‐Guanare Guanare Venezuela

51. Laboratorio de Ecología de Bosques Tropicales y Primatología Universidad de los Andes Bogotá DC Colombia

52. Museo de Historia Natural Noel Kempff Mercado Universidad Autónoma Gabriel Rene Moreno Santa Cruz Bolivia

53. Instituto de Biociências – Department Botanica Universidade de Sao Paulo – USP São Paulo Brazil

54. Programa de Pós‐Graduação em Biologia (Botânica) Instituto Nacional de Pesquisas da Amazônia – INPA Manaus Brazil

55. Endangered Species Coalition Silver Spring Maryland USA

56. Institute of Biodiversity and Ecosystem Dynamics University of Amsterdam Amsterdam The Netherlands

57. School of Environmental Sciences University of East Anglia Norwich UK

58. Biology Department and Center for Energy, Environment and Sustainability Wake Forest University Winston Salem North Carolina USA

59. Facultad de Ciencias Forestales y Ambientales Instituto de Investigaciones para el Desarrollo Forestal, Universidad de los Andes Mérida Venezuela

60. Inventory and Monitoring Program National Park Service Fredericksburg Virginia USA

61. Center for Conservation and Sustainability Smithsonian Conservation Biology Institute Washington District of Columbia USA

62. Universidade Federal do Amapá, Ciências Ambientais Macapá Brazil

63. Gothenburg Global Biodiversity Centre University of Gothenburg Gothenburg Sweden

64. Department of Geography and Planning University of Liverpool Liverpool UK

65. Programa Restauración de Ecosistemas (PRE) Centro de Innovación Científica Amazónica (CINCIA) Puerto Maldonado Peru

66. Peruvian Center for Biodiversity and Conservation (PCBC) Iquitos Peru

67. Department of Ecology Institute of Biological Sciences, University of Brasilia Brasilia Brazil

68. Andes to Amazon Biodiversity Program, Madre de Dios Madre de Dios Peru

69. Escola de Negócios Tecnologia e Inovação Centro Universitário do Pará Belém Brazil

70. Environmental Science Program, Geosciences Department Universidade Federal do Pará Belém Brazil

71. Grupo de Ecología y Conservación de Fauna y Flora Silvestre Instituto Amazónico de Investigaciones Imani, Universidad Nacional de Colombia sede Amazonia Leticia Colombia

72. Universidad Estatal Amazónica Puyo Ecuador

73. Universidad Regional Amazónica IKIAM Tena Ecuador

74. ICNHS, Federal University of Mato Grosso Sinop Brazil

75. Procuradoria‐Geral de Justiça, Ministério Público do Estado do Amazonas Manaus Brazil

76. Coordenação de Dinâmica Ambiental Instituto Nacional de Pesquisas da Amazônia – INPA Manaus Brazil

77. Norwegian University of Life Sciences (NMBU) Faculty of Environmental Sciences and Natural Resource Management Aas Norway

78. Departamento de Genética, Ecologia e Evolução Universidade Federal de Minas Gerais, Instituto de Ciências Biológicas Belo Horizonte Brazil

79. Department of Biology University of Miami Coral Gables Florida USA

80. Fairchild Tropical Botanic Garden Coral Gables Florida USA

81. Instituto de Biociências – Department Ecologia Universidade de Sao Paulo – USP São Paulo Brazil

82. Servicios de Biodiversidad EIRL Iquitos Peru

83. Lancaster Environment Centre Lancaster University Lancaster UK

84. Environmental Change Institute University of Oxford Oxford UK

85. Postgraduate program in Biodiversity and Biotechnology – Bionorte Federal University of Acre Rio Branco Brazil

86. Postgraduate program in Ethnobiology and Nature Conservation Federal Rural University of Pernambuco (UFRPE) Dois Irmãos Brazil

87. Department of Integrative Biology University of California Berkeley California USA

88. Empresa Brasileira de Pesquisa Agropecuária Macapá Brazil

89. Direccíon de Evaluación Forestal y de Fauna Silvestre Magdalena del Mar Peru

90. Instituto de Investigaciones Forestales de la Amazonía Universidad Autónoma del Beni José Ballivián Riberalta Bolivia

91. Escuela de Biología Herbario Alfredo Paredes Universidad Central Quito Ecuador

92. Direction régionale de la Guyane Office national des forêts Cayenne French Guiana

93. Department of Biological Sciences Humboldt State University Arcata California USA

94. Herbario HAG Universidad Nacional Amazónica de Madre de Dios (UNAMAD) Puerto Maldonado Peru

95. Centro de Ciências Biológicas e da Natureza Universidade Federal do Acre Rio Branco Brazil

96. Museo Nacional de Ciencias Naturales (MNCN‐CSIC) Madrid Spain

97. Iwokrama International Centre for Rain Forest Conservation and Development Georgetown Guyana

98. New York Botanical Garden New York New York USA

99. Department for Ecosystem Stewardship Royal Botanic Gardens Kew UK

100. Tropical Diversity Section, Royal Botanic Garden Edinburgh Edinburgh Scotland

101. Herbario Nacional de Bolivia Universitario UMSA La Paz Bolivia

102. Center for Conservation and Sustainable Development Missouri Botanical Garden St Louis Missouri USA

103. Department for Accelerated Taxonomy Royal Botanic Gardens Kew UK

104. Universidad Nacional de Jaén Cajamarca Peru

105. Laboratoire Evolution et Diversité Biologique CNRS and Université Paul Sabatier, UMR 5174 EDB Toulouse France

106. Department of Anthropology University of Texas at Austin Austin Texas USA

107. Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales Universidad San Francisco de Quito‐USFQ Quito Ecuador

108. Fundación Puerto Rastrojo Bogotá DC Colombia

109. Department of Wildlife Ecology and Conservation University of Florida Gainesville Florida USA

110. Biosystematics group Wageningen University Wageningen The Netherlands

111. Fundación Estación de Biología Bogotá DC Colombia

112. Department of Anthropology Tulane University New Orleans Louisiana USA

113. PROTERRA, Instituto de Investigaciones de la Amazonía Peruana (IIAP) Iquitos Peru

114. ACEER Foundation Puerto Maldonado Peru

115. Amazon Conservation Team Arlington Virginia USA

116. Institut de Ciència i Tecnologia Ambientals Universitat Autònoma de Barcelona Barcelona Spain

117. Environmental Change Institute Oxford University Centre for the Environment Oxford UK

118. Instituto de Ciencias Naturales, Universidad Nacional de Colombia Bogotá DC Colombia

119. Instituto de Ciência Agrárias, Universidade Federal Rural da Amazônia Belém Brazil

120. Escuela Profesional de Ingeniería Forestal Universidad Nacional de San Antonio Abad del Cusco Puerto Maldonado Peru

121. Laboratory of Human Ecology Instituto Venezolano de Investigaciones Científicas – IVIC Caracas Venezuela

122. Cambridge University Botanic Garden Cambridge University Cambridge UK

123. Programa de Maestria de Manejo de Bosques Universidad de los Andes Mérida Venezuela

124. Centre for Biodiversity and Conservation Science CBCS The University of Queensland Brisbane Queensland Australia

125. Postgraduate Program in Ecology Federal University of Santa Catarina Florianópolis Brazil

126. Resource Ecology Group Wageningen University & Research Wageningen The Netherlands

127. School of Earth, Environment and Society McMaster University Hamilton Ontario Canada

128. Núcleo de Estudos e Pesquisas Ambientais Universidade Estadual de Campinas – UNICAMP Campinas Brazil

129. Herbarium Amazonense (AMAZ) Universidad Nacional de la Amazonia Peruana Iquitos Peru

130. Laboratório de Ciências Ambientais Universidade Estadual do Norte Fluminense Campos dos Goytacazes Brazil

131. Instituto de Investigaciones para el Desarrollo Forestal (INDEFOR) Universidad de los Andes Mérida Venezuela

132. Departamento de Biologia Universidade Federal do Amazonas – UFAM – Instituto de Ciências Biológicas – ICB1 Manaus Brazil

133. Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor Michigan USA

134. School of Geography University of Nottingham University Park UK

135. Wildlife Conservation Society (WCS) New York New York USA

136. Medio Ambiente, PLUSPRETOL Iquitos Peru

137. The Mauritius Herbarium, Agricultural Services, Ministry of Agro‐Industry and Food Security Reduit Mauritius

138. Department of Biology Aarhus University Aarhus Denmark

139. Escuela de Ciencias Forestales (ESFOR) Universidad Mayor de San Simon (UMSS) Cochabamba Bolivia

140. FOMABO, Manejo Forestal en las Tierras Tropicales de Bolivia Cochabamba Bolivia

141. Departamento de Ciencias Forestales Universidad Nacional de Colombia Medellín Colombia

142. Fundación Amigos de la Naturaleza (FAN) Santa Cruz Bolivia

143. Tropenbos International Ede The Netherlands

144. School of Anthropology and Conservation University of Kent Canterbury UK

145. Herbario Nacional del Ecuador Universidad Técnica del Norte Quito Ecuador

146. Instituto de Biodiversidade e Florestas Universidade Federal do Oeste do Pará Santarém Brazil

147. Facultad de Biologia Universidad Nacional de la Amazonia Peruana Iquitos Peru

148. Department of Biology University of Missouri St Louis Missouri USA

149. School of Geosciences University of Edinburgh Edinburgh UK

Abstract

AbstractAimAmazonia hosts more tree species from numerous evolutionary lineages, both young and ancient, than any other biogeographic region. Previous studies have shown that tree lineages colonized multiple edaphic environments and dispersed widely across Amazonia, leading to a hypothesis, which we test, that lineages should not be strongly associated with either geographic regions or edaphic forest types.LocationAmazonia.TaxonAngiosperms (Magnoliids; Monocots; Eudicots).MethodsData for the abundance of 5082 tree species in 1989 plots were combined with a mega‐phylogeny. We applied evolutionary ordination to assess how phylogenetic composition varies across Amazonia. We used variation partitioning and Moran's eigenvector maps (MEM) to test and quantify the separate and joint contributions of spatial and environmental variables to explain the phylogenetic composition of plots. We tested the indicator value of lineages for geographic regions and edaphic forest types and mapped associations onto the phylogeny.ResultsIn the terra firme and várzea forest types, the phylogenetic composition varies by geographic region, but the igapó and white‐sand forest types retain a unique evolutionary signature regardless of region. Overall, we find that soil chemistry, climate and topography explain 24% of the variation in phylogenetic composition, with 79% of that variation being spatially structured (R2 = 19% overall for combined spatial/environmental effects). The phylogenetic composition also shows substantial spatial patterns not related to the environmental variables we quantified (R2 = 28%). A greater number of lineages were significant indicators of geographic regions than forest types.Main ConclusionNumerous tree lineages, including some ancient ones (>66 Ma), show strong associations with geographic regions and edaphic forest types of Amazonia. This shows that specialization in specific edaphic environments has played a long‐standing role in the evolutionary assembly of Amazonian forests. Furthermore, many lineages, even those that have dispersed across Amazonia, dominate within a specific region, likely because of phylogenetically conserved niches for environmental conditions that are prevalent within regions.

Funder

Conselho Nacional de Desenvolvimento Científico e Tecnológico

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior

Fundação de Amparo à Pesquisa do Estado de São Paulo

Publisher

Wiley

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