Population‐genetic and comparative interpopulation studies of the 15 autosomal STR markers in the population living in the Northwest of Iran

Author:

Haddadan Saeed Ghadimi1ORCID,Babaei Esmaeil1,Setareh Mehrdad2

Affiliation:

1. Department of Biology, School of Natural Science University of Tabriz Tabriz Iran

2. Legal Medicine Research Center Legal Medicine Organization of East Azerbaijan Tabriz Iran

Abstract

AbstractIntroductionIran, a country in the Middle East, has several ethnic and ethno‐religious groups and needs its own ethnic‐specific databases for the forensic statistical parameters and allele frequency of STR markers.MethodsWe have investigated 600 unrelated Turk individuals from four northwestern provinces of Iran using the Identifiler™ system (TPOX, FGA, vWA, TH01, CSF1PO, D2S1338, D3S1358, D5S818, D7S820, D8S1179, D13S317, D16S539, D18S51, D19S433, and D21S11). Furthermore, STR allelic frequencies were compared to previously population‐based data.Results and conclusionAfter Bonferroni correction, deviation from Hardy‐Weinberg equilibrium (HWE) was observed in the FGA, TPOX, VWA, and D19S433 loci (P value < 0.05). The combined power of discrimination (CPD) and exclusion (CPE) values for all 15 STR loci were 0.9999999999999999999984 and 0.9999999, respectively. In comparison with Azerbaijani and Turkish populations, there were no significant differences on all STR markers. However, in the Chinese Han population, differences at 13 STR loci were detected. Additionally, comparisons of Fischer genetic distance indices (FST) P‐values did not reveal any statistically significant difference between Northwestern Iran, Azerbaijan and Iran (Fars) populations. PCA and PCoA analyses showed that our population was grouped with different populations in different quarters, showing a positive and negative correlation, respectively. In the NJ and UPGMA phylogenetic trees, Iranian populations were grouped together. These results demonstrated that the given set of STR markers can be confidently used for all identification tests in Northwestern Iran.

Funder

University of Tabriz

Publisher

Wiley

Reference25 articles.

1. Applied Biosystems. (2012). AmpFLSTRR IdentifilerTM PCR Amplification Kit User's Guide Applied Biosystems Foster City CA.

2. Allele frequency of 15 autosomal short tandem repeat loci in Iranian population with comparison to some other population;Avati M. K.;Journal of Human Genetics and Genomics,2018

3. Allele frequencies of 15 autosomal STR loci in the Iraq population with comparisons to other populations from the middle-eastern region

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