Whole‐genome resequencing reveals novel sex‐related markers and candidate gene in the Chinese soft‐shelled turtle (Pelodiscus sinensis)

Author:

Zeng Dan12,Chen Mengying1,Zeng Jiawei3,Tu Yangyang1,Zhang Yucheng1,Tan Meiling1,Wang Xiaoqing3ORCID

Affiliation:

1. College of life and environmental sciences Hunan University of Arts and Science Changde People's Republic of China

2. Hunan Provincial Collaborative Innovation Center for Efficient and Health Production of Fisheries Hunan Engineering Research Center of Aquatic Organism Resources and Environmental Ecology, Changde Research Center for Agricultural Biomacromolecule Changde People's Republic of China

3. Fisheries College Hunan Agricultural University Changsha People's Republic of China

Abstract

AbstractAn apparent sexual dimorphism, such as growth rate and immunocompetence, is observed in the Chinese soft‐shelled turtle (Pelodiscus sinensis). The identification of sex‐related markers and candidate genes holds significance for the sex‐controlled breeding of P. sinensis. In this study, through an integration of whole‐genome resequencing and Sanger sequencing, 21 female‐specific single nucleotide polymorphisms (SNPs) were identified. Based on these SNPs, the rapid and cost‐effective molecular methodologies for genetic sex identification in P. sinensis were established. Of note, 19 validated SNPs are located within the zinc and ring finger 3 (ZNRF3) gene, which has been reported to be testis‐determining in mammals. Cloning of the ZNRF3 gene from P. sinensis (PsZNRF3) and analysis of its expression profile in tissues and in response to sex steroid hormone treatment demonstrated exhibiting a female‐biased expression pattern. These findings not only provide molecular markers for sex‐controlled breeding in P. sinensis but also open up a solid basis for revealing the sex‐determination mechanism of this species.

Publisher

Wiley

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