StreamingTrim 1.0: a Java software for dynamic trimming of 16S rRNA sequence data from metagenetic studies-Reference-Cited by-同舟云学术

StreamingTrim 1.0: a Java software for dynamic trimming of 16S rRNA sequence data from metagenetic studies

Published:2013-11-16 Issue:2 Volume:14 Page:426-434
ISSN:1755-098X
Container-title:Molecular Ecology Resources
language:en
Short-container-title:Mol Ecol Resour

Author:

Bacci G.¹²,Bazzicalupo M.¹,Benedetti A.²,Mengoni A.¹

Affiliation:

1. Department of Biology; University of Florence; via Madonna del Piano 6 Firenze I-50019 Italy

2. Consiglio per la Ricerca e la Sperimentazione in Agricoltura; Centro di Ricerca per lo Studio delle Relazioni tra Pianta e Suolo (CRA-RPS); Via della Navicella 2/4 Roma I-00184 Italy

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics,Biotechnology

Reference23 articles.

1. Comparative analysis of human gut microbiota by barcoded pyrosequencing;Andersson;PLoS ONE,2008

2. Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments;Bik;Molecular Ecology,2012

3. SolexaQA: at-a-glance quality assessment of Illumina second-generation sequencing data;Cox;BMC Bioinformatics,2010

4. Cosmopolitanism of microbial eukaryotes in the global deep seas;Creer;Molecular Ecology,2012

5. Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises;Creer;Molecular Ecology,2010

Cited by 35 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. The Effect of the Microalgae Chlorella vulgaris on the Gut Microbiota of Juvenile Nile Tilapia (Oreochromis niloticus) Is Feeding-Time Dependent;Microorganisms;2023-04-12

2. Fast, Ungapped Reads Mapping Using Squid;International Journal of Environmental Research and Public Health;2022-04-29

3. Music of metagenomics—a review of its applications, analysis pipeline, and associated tools;Functional & Integrative Genomics;2021-10-18

4. A Large-Scale and Serverless Computational Approach for Improving Quality of NGS Data Supporting Big Multi-Omics Data Analyses;Frontiers in Genetics;2021-07-13

5. Functional Metagenomics for Identification of Antibiotic Resistance Genes (ARGs);Methods in Molecular Biology;2021