eDNAFlow, an automated, reproducible and scalable workflow for analysis of environmental DNA sequences exploiting Nextflow and Singularity-Reference-Cited by-同舟云学术

eDNAFlow, an automated, reproducible and scalable workflow for analysis of environmental DNA sequences exploiting Nextflow and Singularity

Published:2021-03-09 Issue:5 Volume:21 Page:1697-1704
ISSN:1755-098X
Container-title:Molecular Ecology Resources
language:en
Short-container-title:Mol Ecol Resour

Author:

Mousavi‐Derazmahalleh Mahsa¹²³^ORCID,Stott Audrey⁴,Lines Rose¹²³,Peverley Georgia³,Nester Georgia¹,Simpson Tiffany¹³,Zawierta Michal⁵,De La Pierre Marco⁴,Bunce Michael¹⁶^ORCID,Christophersen Claus T.¹²⁷

Affiliation:

1. Trace and Environmental DNA (TrEnD) Laboratory School of Molecular and Life Sciences Curtin University Bentley WA Australia

2. WA Human Microbiome Collaboration Centre (WAHMCC) School of Molecular and Life Sciences Curtin University Bentley WA Australia

3. eDNA Frontiers School of Molecular and Life Sciences Curtin University Bentley WA Australia

4. Pawsey Supercomputing Centre Kensington WA Australia

5. Department of Electrical, Electronic and Computer Engineering The University of Western Australia Nedlands WA Australia

6. Environmental Protection Authority Wellington New Zealand

7. School of Medical & Health Sciences Edith Cowan University Joondalup WA Australia

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics,Biotechnology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/1755-0998.13356

Reference35 articles.

1. Development of a multi-assay approach for monitoring coral diversity using eDNA metabarcoding

2. Basic local alignment search tool

3. Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

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