Towards reproducible metabarcoding data: Lessons from an international cross‐laboratory experiment-Reference-Cited by-同舟云学术

Towards reproducible metabarcoding data: Lessons from an international cross‐laboratory experiment

Published:2021-08-31 Issue:2 Volume:22 Page:519-538
ISSN:1755-098X
Container-title:Molecular Ecology Resources
language:en
Short-container-title:Molecular Ecology Resources

Author:

Zaiko Anastasija¹²^ORCID,Greenfield Paul³⁴^ORCID,Abbott Cathryn⁵^ORCID,Ammon Ulla¹^ORCID,Bilewitch Jaret⁶^ORCID,Bunce Michael⁷^ORCID,Cristescu Melania E.⁸^ORCID,Chariton Anthony⁴^ORCID,Dowle Eddy⁹,Geller Jonathan¹⁰^ORCID,Ardura Gutierrez Alba¹¹^ORCID,Hajibabaei Mehrdad¹²^ORCID,Haggard Emmet¹⁰,Inglis Graeme J.¹³^ORCID,Lavery Shane D.²¹⁴^ORCID,Samuiloviene Aurelija¹⁵,Simpson Tiffany¹⁶^ORCID,Stat Michael¹⁷^ORCID,Stephenson Sarah³,Sutherland Judy⁶^ORCID,Thakur Vibha¹⁴,Westfall Kristen⁵^ORCID,Wood Susanna A.¹^ORCID,Wright Michael¹²^ORCID,Zhang Guang⁸^ORCID,Pochon Xavier¹²^ORCID

Affiliation:

1. Coastal and Freshwater Group Cawthron Institute Nelson New Zealand

2. Institute of Marine Science University of Auckland Auckland New Zealand

3. Commonwealth Scientific and Industrial Research Organisation (CSIRO) Canberra Australian Capital Territory Australia

4. Environmental (e)DNA and Biomonitoring Lab Department of Biological Sciences Macquarie University Sydney Australia

5. Fisheries and Oceans CanadaPacific Biological Station Nanaimo British Columbia Canada

6. National Institute of Water & Atmospheric Research Ltd (NIWA) Hataitai, Wellington New Zealand

7. Environmental Protection Authority Wellington New Zealand

8. McGill University Montreal Québec Canada

9. School of Biomedical Sciences University of Otago Dunedin New Zealand

10. Moss Landing Marine Laboratories San Jose State University Moss Landing California USA

11. Department of Functional Biology University of Oviedo Oviedo Spain

12. Canada University of Guelph Guelph Canada

13. National Institute of Water & Atmospheric Research Ltd (NIWA) Christchurch New Zealand

14. School of Biological Sciences University of Auckland Auckland New Zealand

15. Marine Research Institute Klaipeda University Klaipeda Lithuania

16. Curtin University Bentley, Perth Western Australia Australia

17. The University of Newcastle Newcastle New South Wales Australia

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics,Biotechnology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/1755-0998.13485

Reference79 articles.

1. Effects of PCR cycle number and DNA polymerase type on the 16S rRNA gene pyrosequencing analysis of bacterial communities

2. Scrutinizing key steps for reliable metabarcoding of environmental samples

3. Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities

4. A new method for non‐parametric multivariate analysis of variance;Anderson M. J.;Austral Ecology,2001

5. Permutational Multivariate Analysis of Variance ( PERMANOVA )

Cited by 34 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. New insights into biologic interpretation of bioinformatic pipelines for fish eDNA metabarcoding: A case study in Pearl River estuary;Journal of Environmental Management;2024-09

2. Relating target fish DNA concentration to community composition analysis in freshwater fish via metabarcoding;Science of The Total Environment;2024-06

3. Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols;Scientific Reports;2024-04-29

4. A Sensitivity Analysis of Methodological Variables Associated with Microbiome Measurements;2023-12-12

5. Harnessing environmental DNA to reveal biogeographical patterns of non-indigenous species for improved co-governance of the marine environment in Aotearoa New Zealand;Scientific Reports;2023-10-10