<scp>slag</scp> : A program for seeded local assembly of genes in complex genomes-Reference-Cited by-同舟云学术

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slag : A program for seeded local assembly of genes in complex genomes

Published:2022-01-27 Issue:5 Volume:22 Page:1999-2017
ISSN:1755-098X
Container-title:Molecular Ecology Resources
language:en
Short-container-title:Molecular Ecology Resources

Author:

Crane Charles F.¹²^ORCID,Nemacheck Jill A.¹³,Subramanyam Subhashree¹³^ORCID,Williams Christie E.¹,Goodwin Stephen B.¹²

Affiliation:

1. USDA‐Agricultural Research Service Crop Production & Pest Control Research Unit Purdue University campus West Lafayette Indiana USA

2. Department of Botany & Plant Pathology Purdue University West Lafayette Indiana USA

3. Department of Entomology Purdue University West Lafayette Indiana USA

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics,Biotechnology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/1755-0998.13580

Reference45 articles.

1. Replacing suffix trees with enhanced suffix arrays;Abouelhoda M. I.;Journal of Discrete Algorithms,2004

2. aTRAM ‐ automated target restricted assembly method: A fast method for assembling loci across divergent taxa from next‐generation sequencing data;Allen J. M.;BMC Bioinformatics,2015

3. aTRAM 2.0: An improved, flexible locus assembler for NGS data;Allen J. M.;Evolutionary Bioinformatics,2018

4. SPAdes: a new genome assembly algorithm and its applications to single cell sequencing;Bankevich A.;Journal of Computational Biology,2012

5. GRAbB: selective assembly of genomic regions, a new niche for genomic research;Brankovics B.;PLoS Computional Biology,2016

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1. Phylogenomics of transcriptionally active AP2/ERF and bHLH transcription factors and study of their promoter regions in Nothapodytes nimmoniana (J.Graham) Mabb;GENOME;2023

2. Phylogenomics of transcriptionally active AP2/ERF and bHLH transcription factors and study of their promoter regions in Nothapodytes nimmoniana (J.Graham) Mabb;Genome;2023-09-01

3. MTG-Link: leveraging barcode information from linked-reads to assemble specific loci;BMC Bioinformatics;2023-07-14

4. MTG-Link: leveraging barcode information from linked-reads to assemble specific loci;2022-09-28

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