Quantitative prey species detection in predator guts across multiple trophic levels by mapping unassembled shotgun reads

Author:

Paula Débora P.1ORCID,Timbó Renata V.12,Togawa Roberto C.1,Vogler Alfried P.34,Andow David A.5ORCID

Affiliation:

1. Embrapa Recursos Genéticos e Biotecnologia Brasília DF Brazil

2. Universidade de Brasília, Campus Universitário Darcy Ribeiro Brasília DF Brazil

3. Imperial College London, Silwood Park Campus Ascot UK

4. Department of Life Sciences Natural History Museum London UK

5. Department of Entomology University of Minnesota St. Paul Minnesota USA

Funder

U.S. Department of Agriculture

Universidade Federal de Lavras

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics,Biotechnology

Reference81 articles.

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2. Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

3. Andrews D.(2010).FastQC: A quality control tool for high throughput sequence data.http://www.bioinformatics.babraham.ac.uk/projects/fastqc.

4. Voices in methods development

5. Aronesty E.(2011).Ea‐utils: "command‐line tools for processing biological sequencing data".http://code.google.com/p/ea‐utils.

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