High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities-Reference-Cited by-同舟云学术

High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities

Published:2018-07-03 Issue:2 Volume:48 Page:219-224
ISSN:0250-8052
Container-title:EPPO Bulletin
language:en
Short-container-title:EPPO Bull

Author:

Olmos A.¹,Boonham N.²,Candresse T.³,Gentit P.⁴,Giovani B.⁵,Kutnjak D.⁶,Liefting L.⁷,Maree H.J.⁸,Minafra A.⁹,Moreira A.¹⁰,Nakhla M.K.¹¹,Petter F.⁵,Ravnikar M.⁶,Rodoni B.¹²,Roenhorst J.W.¹³,Rott M.¹⁴,Ruiz-García A.B.¹⁴,Santala J.¹⁵,Stancanelli G.¹⁶,van der Vlugt R.¹⁷,Varveri C.¹⁸,Westenberg M.¹³,Wetzel T.¹⁹,Ziebell H.²⁰,Massart S.²¹

Affiliation:

1. Instituto Valenciano de Investigaciones Agrarias; Ctra Moncada a Náquera km 4.5 46113 Moncada, Valencia (Spain)

2. Newcastle University; Newcastle upon Tyne NE1 7RU (UK)

3. Equipe de Virologie; UMR 1332 Biologie du Fruit et Pathologie; INRA; University of Bordeaux; 71 avenue E. Bourlaux CS 20032, 33882 Villenave d'Ornon Cedex (France)

4. French Agency for Food, Environmental and Occupational Health and Safety-Plant Health Laboratory; Unité de Bactériologie, Virologie et détection des OGM; 7 rue Jean Dixméras 49044 Angers Cedex 01 (France)

5. European and Mediterranean Plant Protection Organization; 21 boulevard Richard Lenoir 75011 Paris (France)

6. National Institute of Biology; Večna pot 111 1000 Ljubljana (Slovenia

7. Ministry for Primary Industries; PO Box 2095 Auckland 1140 (New Zealand

8. Stellenbosch University; Private Bag X1 Matieland 7602 (South Africa)

9. Institute for Sustainable Plant Protection; CNR; Via Amendola, 122/D I-70126 Bari (Italy)

10. Secretariat of the International Plant Protection Convention; Viale delle Terme di Caracalla 00153 Rome (Italy)

11. Beltsville Laboratory; USDA APHIS PPQ, Science and Technology; Building 580, BARC-East Beltsville MD 20705 (USA)

12. AgriBio; La Trobe University Bundoora; Vic 3083 (Australia)

13. National Reference Centre; National Plant Protection Organization; Geertjesweg 15 6706 EA Wageningen (The Netherlands)

14. Canadian Food Inspection Agency; 8801 East Saanich Road Sidney BC V8L 1H3 (Canada)

15. Research Department; Plant Analysis Laboratory Unit; Finnish Food Safety Authority Evira; Mustialankatu 3 FI-00790 Helsinki (Finland)

16. Animal and Plant Health Unit; European Food Safety Authority; Via Carlo Magno 1A 43126 Parma (Italy)

17. Wageningen Plant Research; P.O. Box 16 6700 AA Wageningen (The Netherlands)

18. Benaki Phytopathological Institute; 8 Stefanou Delta Street Kifissia Athens 14561 (Greece)

19. DLR Rheinpfalz; Institute of Plant Protection; 67435 Neustadt an der Weinstrasse (Germany)

20. Institute for Epidemiology and Pathogen Diagnostics; Julius Kuehn-Institute; Messeweg 11/12 38104 Braunschweig (Germany)

21. Gembloux Agro-Bio Tech; TERRA; Laboratory of Plant Pathology; University of Liège; Passage des déportés 2 - 5030 Gembloux (Belgium)

Publisher

Wiley

Subject

Horticulture,Plant Science,Agronomy and Crop Science

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1111/epp.12472/fullpdf

Reference10 articles.

1. Comparison of next-generation sequencing versus biological indexing for the optimal detection of viral pathogens in grapevine;Al Rwahnih;Phytopathology,2015

2. FAO 2016 R-07 Recommendation on: The importance on pest diagnosis https://www.ippc.int/en/publications/84234/

3. Next-generation sequencing and genome editing in plant virology;Hadidi;Frontiers in Microbiology,2016

4. Identification and distribution of multiple virus infections in Grapevine leafroll diseased vineyards;Jooste;European Journal of Plant Pathology,2015

5. A framework for the evaluation of biosecurity, commercial, regulatory and scientific impacts of plant viruses and viroids identified by NGS technologies;Massart;Frontiers in Microbiology,2017

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