PhyloMCL: Accurate clustering of hierarchical orthogroups guided by phylogenetic relationship and inference of polyploidy events-Reference-Cited by-同舟云学术

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PhyloMCL: Accurate clustering of hierarchical orthogroups guided by phylogenetic relationship and inference of polyploidy events

Published:2020-06-12 Issue:8 Volume:11 Page:943-954
ISSN:2041-210X
Container-title:Methods in Ecology and Evolution
language:en
Short-container-title:Methods Ecol Evol

Author:

Zhou Shengyu¹^ORCID,Chen Yamao¹^ORCID,Guo Chunce²^ORCID,Qi Ji¹^ORCID

Affiliation:

1. State key Laboratory of Genetic Engineering Institute of Plant Biology School of Life Sciences Fudan University Shanghai China

2. Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization Forestry College Jiangxi Agricultural University Nanchang China

Funder

National Natural Science Foundation of China

Publisher

Wiley

Subject

Ecological Modeling,Ecology, Evolution, Behavior and Systematics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.13401

Reference54 articles.

1. Standardized benchmarking in the quest for orthologs

2. OMA 2011: orthology inference among 1000 complete genomes

3. An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes.

4. Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution[W]

5. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

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1. Spatiotemporal transcriptome atlas reveals gene regulatory patterns during the organogenesis of the rapid growing bamboo shoots;New Phytologist;2024-08-14

2. Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages;Nature Communications;2024-04-17

3. Whole Genome Duplication Events Likely Contributed to the Aquatic Adaptive Evolution of Parkerioideae;Plants;2024-02-14

4. Regulation of micro- and small-exon retention and other splicing processes by GRP20 for flower development;Nature Plants;2024-01-09

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