<scp> <i>ngs</i> LCA </scp> —A toolkit for fast and flexible lowest common ancestor inference and taxonomic profiling of metagenomic data-Reference-Cited by-同舟云学术

ngs LCA —A toolkit for fast and flexible lowest common ancestor inference and taxonomic profiling of metagenomic data

Published:2022-10-13 Issue:12 Volume:13 Page:2699-2708
ISSN:2041-210X
Container-title:Methods in Ecology and Evolution
language:en
Short-container-title:Methods Ecol Evol

Author:

Wang Yucheng¹²³⁴^ORCID,Korneliussen Thorfinn Sand²^ORCID,Holman Luke E.⁵⁶^ORCID,Manica Andrea¹^ORCID,Pedersen Mikkel Winther²^ORCID

Affiliation:

1. Department of Zoology University of Cambridge Cambridge UK

2. Lundbeck Foundation GeoGenetics Centre, Globe Institute University of Copenhagen Copenhagen K Denmark

3. ALPHA, State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER) Institute of Tibetan Plateau Research (ITPCAS), Chinese Academy of Sciences (CAS) Beijing China

4. BGI BGI‐Shenzhen Shanghai China

5. School of Ocean and Earth Science, National Oceanography Centre Southampton University of Southampton Southampton UK

6. Section for Evolutionary Genomics, Faculty of Health and Medical Sciences, Globe Institute University of Copenhagen Copenhagen Denmark

Funder

Carlsbergfondet

Publisher

Wiley

Subject

Ecological Modeling,Ecology, Evolution, Behavior and Systematics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.14006

Reference36 articles.

1. PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index

2. Bacterial Viability and Culturability

3. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

4. Comparing whole‐genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

5. sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

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