Diverse and mobile: <scp>eccDNA</scp> ‐based identification of carrot low‐copy‐number <scp>LTR</scp> retrotransposons active in callus cultures-Reference-Cited by-同舟云学术

Diverse and mobile: eccDNA ‐based identification of carrot low‐copy‐number LTR retrotransposons active in callus cultures

Published:2022-05-10 Issue:6 Volume:110 Page:1811-1828
ISSN:0960-7412
Container-title:The Plant Journal
language:en
Short-container-title:The Plant Journal

Author:

Kwolek Kornelia¹,Kędzierska Patrycja¹,Hankiewicz Magdalena¹,Mirouze Marie²³,Panaud Olivier²,Grzebelus Dariusz¹,Macko‐Podgórni Alicja¹^ORCID

Affiliation:

1. Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture University of Agriculture in Krakow 31 120 Krakow Poland

2. Laboratoire Génome et Développement des Plantes, UMR 5096 CNRS/UPVD Université de Perpignan Via Domitia, 52 Avenue Paul Alduy 66 860 Perpignan Cedex France

3. IRD, EMR IRD‐CNRS‐UPVD ‘MANGO’ Université de Perpignan Perpignan France

Funder

Agence Nationale de la Recherche

Ministerstwo Nauki i Szkolnictwa Wyższego

Narodowe Centrum Nauki

Uniwersytet Rolniczy im. Hugona Kołłątaja w Krakowie

Ministry of Education and Science

Publisher

Wiley

Subject

Cell Biology,Plant Science,Genetics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.15773

Reference113 articles.

1. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

2. Different tobacco retrotransposons are specifically modulated by the elicitor cryptogein and reactive oxygen species

3. AndrewsS.(2010)FastQC: a quality control tool for high throughput sequence data.http://www.bioinformatics.babraham.ac.uk/projects/fastqc.

4. Genome‐wide DNA hypomethylation shapes nematode pattern‐triggered immunity in plants

5. The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives

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