Technical considerations in Hi‐C scaffolding and evaluation of chromosome‐scale genome assemblies-Reference-Cited by-同舟云学术

登录注册会员服务联系我们

Technical considerations in Hi‐C scaffolding and evaluation of chromosome‐scale genome assemblies

Published:2021-09-12 Issue:23 Volume:30 Page:5923-5934
ISSN:0962-1083
Container-title:Molecular Ecology
language:en
Short-container-title:Mol Ecol

Author:

Yamaguchi Kazuaki¹^ORCID,Kadota Mitsutaka¹^ORCID,Nishimura Osamu¹^ORCID,Ohishi Yuta¹^ORCID,Naito Yuki²^ORCID,Kuraku Shigehiro¹³⁴^ORCID

Affiliation:

1. Laboratory for PhyloinformaticsRIKEN Center for Biosystems Dynamics Research Kobe Japan

2. Database Center for Life Science (DBCLS) Mishima Japan

3. Molecular Life History LaboratoryNational Institute of Genetics Mishima Japan

4. Department of Genetics Sokendai (Graduate University for Advanced Studies) Mishima Japan

Funder

RIKEN

Ministry of Education, Culture, Sports, Science and Technology

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/mec.16146

Reference56 articles.

1. instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

2. Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation

3. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

4. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

5. BlobToolKit – Interactive Quality Assessment of Genome Assemblies

Cited by 23 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Chromosomal DNA sequences of the Pacific saury genome: versatile resources for fishery science and comparative biology;DNA Research;2024-03-07

2. Hi-C techniques: from genome assemblies to transcription regulation;Journal of Experimental Botany;2024-03-02

3. High genetic load without purging in caribou, a diverse species at risk;Current Biology;2024-03

4. Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing;BMC Genomics;2024-02-29

5. Comparative Evolutionary Genomics in Insects;Methods in Molecular Biology;2024

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号京ICP备18003416号-3