Deep learning to extract the meteorological by‐catch of wildlife cameras

Author:

Alison Jamie1ORCID,Payne Stephanie2ORCID,Alexander Jake M.3ORCID,Bjorkman Anne D.45ORCID,Clark Vincent Ralph6ORCID,Gwate Onalenna6ORCID,Huntsaar Maria78,Iseli Evelin3ORCID,Lenoir Jonathan9ORCID,Mann Hjalte Mads Rosenstand110ORCID,Steenhuisen Sandy‐Lynn2ORCID,Høye Toke Thomas110ORCID

Affiliation:

1. Department of Ecoscience Aarhus University Aarhus Denmark

2. Afromontane Research Unit and Department of Plant Sciences University of the Free State Bloemfontein South Africa

3. Institute of Integrative Biology ETH Zurich Zurich Switzerland

4. Department of Biological and Environmental Sciences University of Gothenburg Gothenburg Sweden

5. Gothenburg Global Biodiversity Centre Gothenburg Sweden

6. Afromontane Research Unit and Department of Geography University of the Free State Bloemfontein South Africa

7. Arctic Biology Department The University Centre in Svalbard (UNIS) Longyearbyen Norway

8. Department of Arctic and Marine Biology The Arctic University of Norway (UiT) Tromsø Norway

9. UMR CNRS 7058 “Ecologie et Dynamique des Systèmes Anthropisés” (EDYSAN) Université de Picardie Jules Verne Amiens France

10. Arctic Research Centre Aarhus University Aarhus Denmark

Abstract

AbstractMicroclimate—proximal climatic variation at scales of metres and minutes—can exacerbate or mitigate the impacts of climate change on biodiversity. However, most microclimate studies are temperature centric, and do not consider meteorological factors such as sunshine, hail and snow. Meanwhile, remote cameras have become a primary tool to monitor wild plants and animals, even at micro‐scales, and deep learning tools rapidly convert images into ecological data. However, deep learning applications for wildlife imagery have focused exclusively on living subjects. Here, we identify an overlooked opportunity to extract latent, ecologically relevant meteorological information. We produce an annotated image dataset of micrometeorological conditions across 49 wildlife cameras in South Africa's Maloti‐Drakensberg and the Swiss Alps. We train ensemble deep learning models to classify conditions as overcast, sunshine, hail or snow. We achieve 91.7% accuracy on test cameras not seen during training. Furthermore, we show how effective accuracy is raised to 96% by disregarding 14.1% of classifications where ensemble member models did not reach a consensus. For two‐class weather classification (overcast vs. sunshine) in a novel location in Svalbard, Norway, we achieve 79.3% accuracy (93.9% consensus accuracy), outperforming a benchmark model from the computer vision literature (75.5% accuracy). Our model rapidly classifies sunshine, snow and hail in almost 2 million unlabelled images. Resulting micrometeorological data illustrated common seasonal patterns of summer hailstorms and autumn snowfalls across mountains in the northern and southern hemispheres. However, daily patterns of sunshine and shade diverged between sites, impacting daily temperature cycles. Crucially, we leverage micrometeorological data to demonstrate that (1) experimental warming using open‐top chambers shortens early snow events in autumn, and (2) image‐derived sunshine marginally outperforms sensor‐derived temperature when predicting bumblebee foraging. These methods generate novel micrometeorological variables in synchrony with biological recordings, enabling new insights from an increasingly global network of wildlife cameras.

Funder

Department of Science and Innovation, South Africa

Innovationsfonden

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung

Publisher

Wiley

Subject

General Environmental Science,Ecology,Environmental Chemistry,Global and Planetary Change

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