Bacillus tequilensis influences metabolite production in tomato and restores soil microbial diversity during Fusarium oxysporum infection

Abstract

Abstract This study evaluates cellular damage, metabolite profiling, and defence‐related gene expression in tomato plants and soil microflora during Fusarium wilt disease after treatment with B. tequilensis PBE‐1. Histochemical analysis showed that PBE‐1 was the primary line of defence through lignin deposition and reduced cell damage. GC–MS revealed that PBE‐1 treatment ameliorated stress caused by F. oxysporum infection. PBE‐1 also improved transpiration, photosynthesis, and stomatal conductance in tomato. qRT‐PCR suggested that the defence‐related genes FLS2, SERK, NOS, WRKYT, NHO, SAUR, and MYC2, which spread infection, were highly upregulated during F. oxysporum infection, but either downregulated or expressed normally in PBE‐1 + P treated plants. This indicates that the plant not only perceives the bio‐control agent as a non‐pathogen entity but its presence in normal metabolism and gene expression within the host plant is maintained. The study further corroborated findings that application of PBE‐1 does not cause ecological disturbances in the rhizosphere. Activity of soil microflora across four treatments, measured by Average Well Colour Development (AWCD), showed continuous increases from weeks 1 to 4 post-pathogen infection, with distinct substrate usage patterns like tannic and fumaric acids impacting microbial energy source utilization and diversity. Principal Component Analysis (PCA) and diversity indices like McIntosh, Shannon, and Simpson further illustrated significant microbial community shifts over the study period. In conclusion, our findings demonstrate that B. tequilensis PBE‐1 is an ideal bio‐agent for field application during Fusarium wilt disease management in tomato.