Phylogenomics ofEnterococcus faecalisfrom wild birds: new insights into host‐associated differences in core and accessory genomes of the species

Author:

León‐Sampedro Ricardo12ORCID,del Campo Rosa13,Rodriguez‐Baños Mercedes1,Lanza Val F.12,Pozuelo María José4,Francés‐Cuesta Carlos56ORCID,Tedim Ana P.1,Freitas Ana R.7,Novais Carla7,Peixe Luísa7,Willems Rob J. L.8,Corander Jukka9,González Candelas Fernando256,Baquero Fernando1210,Coque Teresa M.1210

Affiliation:

1. Department of MicrobiologyUniversity Hospital Ramón y Cajal, Ramón y Cajal Health Research Institute (IRYCIS) Madrid Spain

2. Biomedical Research Networking Center for Epidemiology and Public Health (CIBER‐ESP) Madrid Spain

3. Spanish Network for Research in Infectious Diseases (REIPI)Health Institute Carlos III Madrid Spain

4. Department of Biology, Pharmacy FacultyUniversity San Pablo‐CEU Boadilla del Monte Spain

5. Infection and Public Health UnitFISABIO/University of Valencia Spain

6. Institute for Integrative Systems Biology, I2SysBioCSIC‐University of Valencia Valencia Spain

7. UCIBIO/REQUIMTE, Department of Biological Sciences, Microbiology Laboratory, Pharmacy FacultyUniversity of Porto Porto Portugal

8. Department of Medical MicrobiologyUniversity Medical Center Utrecht Utrecht the Netherlands

9. Department of BiostatisticsUniversity of Oslo Oslo Norway

10. Antibiotic Resistance and Bacterial Virulence Unit Associated with the Superior Council of Scientific Investigations (CSIC) Madrid Spain

Funder

Joint Programming Initiative on Antimicrobial Resistance

Publisher

Wiley

Subject

Ecology, Evolution, Behavior and Systematics,Microbiology

Reference64 articles.

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2. plasmidSPAdes: assembling plasmids from whole genome sequencing data;Antipov D.;Bioinformatics,2016

3. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

4. A General Method for Detecting and Sizing Large Plasmids

5. Human health risks associated with antimicrobial-resistant enterococci and Staphylococcus aureus on poultry meat

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