Nitrogen release from five organic fertilizers commonly used in greenhouse organic horticulture with contrasting effects on bacterial communities

Abstract

Organic fertilization in greenhouses relies on organic fertilizers with low carbon/nitrogen ratio. Nitrogen (N) availability thus depends on an efficient mineralization driven by microbial communities. However, data on the mineralization rate of such fertilizers are scarce, and their improper use can lead to either N deficiency, or N losses to the environment. Consequently, better knowledge of N availability following organic fertilization is crucial for the development of sustainable greenhouse organic horticulture. We investigated the effect of pelleted poultry manure (PM) and blood (BM), feather (FM), alfalfa (AM), and shrimp (SM) meals on N availability and bacterial communities in a peat-based organic growing medium and a mineral soil. Nitrogen and carbon (C) pools were measured periodically over a 52 wk incubation experiment. Bacterial communities were characterized by sequencing the regions V6–V8 of the 16S rRNA gene on the high-throughput Illumina MiSeq platform, 4 wk after the start of the incubation. Nitrogen mineralization plateaued for the mineral soil and the peat substrate at, respectively, 41% and 63% of applied N for PM, 56%–93% (BM), 54%–81% (FM), 34%–53% (AM), and 57%–73% (SM). Organic fertilizers supported markedly contrasted bacterial communities, closely linked to soil biochemical properties, especially mineral N, pH, and soluble C. Alfalfa meal promoted the highest Shannon diversity index in the mineral soil, whereas SM and PM increased it in the peat-based growing medium. Our results quantified the mineralization and highlighted the impact on bacterial communities of commonly used organic N fertilizers in conditions relevant to organic greenhouse horticulture.