Cucumber powdery mildew detection using hyperspectral data

Abstract

This study aimed to understand the spectral changes induced by Podosphaera xanthii, the causal agent of powdery mildew, in cucumber leaves from the moment of inoculation until visible symptoms are apparent. A principal component analysis (PCA) was applied to the spectra to assess the spectral separability between healthy and infected leaves. A spectral ratio between infected and healthy leaf spectra was used to determine the best wavelengths for detecting the disease. Additionally, the spectra were used to compute two spectral variables [i.e., the red-well point (RWP) and the red-edge inflexion point (REP)]. A linear support vector machine (SVM) classifier was applied to certain spectral features to assess how well these features can separate the infected leaves from the healthy ones. The PCA showed that a good separability could be achieved from 4 days post-inoculation (DPI). The best model to fit the RWP and REP wavelengths corresponded to a linear model. The linear model had a higher adjusted R2 for the infected leaves than for the healthy leaves. The SVM trained with five first principal components scores achieved an overall accuracy of 95% at 4 DPI (i.e., two days before the visible symptoms). With the RWP and REP parameters, the SVM accuracy increased as a function of the day of inoculation, reaching 89% and 86%, respectively, when symptoms were visible at 6 DPI. Further research must consider a higher number of samples and more temporal repetitions of the experiment.