PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms-Reference-Cited by-同舟云学术

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PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms

Published:2019-08 Issue:8 Volume:18 Page:S126-S140
ISSN:1535-9476
Container-title:Molecular & Cellular Proteomics
language:en
Short-container-title:Molecular & Cellular Proteomics

Author:

Verbruggen Steven,Ndah Elvis,Van Criekinge Wim,Gessulat Siegfried,Kuster Bernhard,Wilhelm Mathias,Van Damme Petra,Menschaert Gerben

Funder

Bijzonder Onderzoeksfonds (BOF)

Fonds Wetenschappelijk Onderzoek (FWO)

EC | Horizon 2020 Framework Programme (H2020)

Publisher

Elsevier BV

Subject

Molecular Biology,Biochemistry,Analytical Chemistry

Reference64 articles.

1. Proteogenomics: Concepts, applications and computational strategies;Nesvizhskii;Nat. Methods,2014

2. Proteogenomics from a bioinformatics angle: a growing field;Menschaert;Mass Spectrom. Rev,2015

3. Revisiting the identification of canonical splice isoforms through integration of functional genomics and proteomics evidence;Li;Proteomics,2014

4. Compact variant-rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses;Park;Proteomics,2014

5. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling;Ingolia;Science,2009

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1. ORFeus: a computational method to detect programmed ribosomal frameshifts and other non-canonical translation events;BMC Bioinformatics;2023-12-13

2. Proteogenomics 101: a primer on database search strategies;Journal of Proteins and Proteomics;2023-11-21

3. Current perspectives on mass spectrometry-based immunopeptidomics: the computational angle to tumor antigen discovery;Journal for ImmunoTherapy of Cancer;2023-10

4. RiboGalaxy: A Galaxy-based Web Platform for Ribosome Profiling Data Processing – 2023 Update;Journal of Molecular Biology;2023-07

5. N-terminal proteoforms may engage in different protein complexes;Life Science Alliance;2023-06-14

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