Geometrical motifs search in proteins: A parallel approach

Author:

Ferretti Marco,Musci Mirto

Publisher

Elsevier BV

Subject

Artificial Intelligence,Computer Graphics and Computer-Aided Design,Computer Networks and Communications,Hardware and Architecture,Theoretical Computer Science,Software

Reference17 articles.

1. Entire motifs search of secondary structures in proteins: a parallelization study;Ferretti,2013

2. Structural analysis of protein secondary structure by GHT;Cantoni,2012

3. V. Cantoni, A. Ferone, O. Özbudak, A. Petrosino, Motif retrieval by exhaustive matching and couple co-occurrences, in: Ninth International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, CIBB’12, July 12–14, Texas, 2012, pp. 1767–1770.

4. Generalizing the Hough transform to detect arbitrary shapes;Ballard;Pattern Recognit.,1981

5. Searching for three-dimensional secondary structural patterns in proteins with ProSMoS;Shi;Bioinformatics,2007

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1. Exploring Scalable Parallelization for Edit Distance-Based Motif Search;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2023-03-01

2. Optimized cloud-based scheduling for protein secondary structure analysis;The Journal of Supercomputing;2019-04-25

3. Hybrid OpenMP-MPI Parallelism: Porting Experiments from Small to Large Clusters;2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP);2018-03

4. Mining Geometrical Motifs Co-occurrences in the CMS Dataset;Communications in Computer and Information Science;2018

5. Protein Secondary Structure Analysis in the Cloud;Proceedings of the 6th International Workshop on Parallelism in Bioinformatics - PBio 2018;2018

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