ORF-based binarized structure network analysis of plasmids (OSNAp), a novel approach to core gene-independent plasmid phylogeny-Reference-Cited by-同舟云学术

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ORF-based binarized structure network analysis of plasmids (OSNAp), a novel approach to core gene-independent plasmid phylogeny

Published:2020-03 Issue: Volume:108 Page:102477
ISSN:0147-619X
Container-title:Plasmid
language:en
Short-container-title:Plasmid

Author:

Suzuki Masahiro,Doi Yohei,Arakawa Yoshichika

Funder

Food Safety Commission

Cabinet Office, Government of Japan

Research Program for Risk Assessment Study on Food Safety

National Institutes of Health

Publisher

Elsevier BV

Subject

Molecular Biology

Reference29 articles.

1. Core elements of the vegetative replication control of the Inc1 plasmid pO104_90 of Escherichia coli O104:H4 also regulate its transfer frequency;Berger;Int. J. Med. Microbiol.,2018

2. Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network;Brilli;BMC Bioinforma.,2008

3. Neighbor-net: an agglomerative method for the construction of phylogenetic networks;Bryant;Mol. Biol. Evol.,2004

4. In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing;Carattoli;Antimicrob. Agents Chemother.,2014

5. Phylogenomic networks;Dagan;Trends Microbiol.,2011

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2. Novel insights into genetic characteristics of blaGES-encoding plasmids from hospital sewage;Frontiers in Microbiology;2023-08-17

3. Genetic basis of I-complex plasmid stability and conjugation;PLOS Genetics;2023-06-22

4. Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation;BMC Genomics;2023-04-04

5. Bird's-eye MApping of plasmids (BeMAp) for visualization and comparison of genomic structures of different plasmids by mapping antimicrobial resistance genes on spreadsheets;Journal of Microbiological Methods;2023-01

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