Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots

Author:

Akutsu Tatsuya

Publisher

Elsevier BV

Subject

Applied Mathematics,Discrete Mathematics and Combinatorics

Reference18 articles.

1. Prediction of RNA secondary structure, including pseudoknotting by computer simulation;Abrahams;Nucleic Acids Res.,1990

2. Y. Akiyama, M. Kanehisa, NeuroFold: an RNA secondary structure prediction system using a Hopfield neural network, Proceedings of the Genome Informatics Workshop III, Universal Academy Press, Tokyo, 1992, pp. 199–202 (in Japanese).

3. Approximation and exact algorithms for RNA secondary structure prediction and recognition of stochastic context-free languages;Akutsu;J. Combin. Optim.,1999

4. RNA pseudoknots modeling using intersections of stochastic context free grammars with applications to database search;Brown,1996

5. Dynamic programming with convexity, concavity and sparsity;Galil;Theoret. Comput. Sci.,1992

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