A practical handbook on single-cell RNA sequencing data quality control and downstream analysis

Author:

Kim Gyeong Dae,Lim Chaemin,Park Jihwan

Funder

National Research Foundation of Korea

Gwangju Institute of Science and Technology

Publisher

Elsevier BV

Reference44 articles.

1. 10X_GENOMICS. (2022). Chromium Single Cell 3′ Reagent Kits User Guide (v3.1 Chemistry) (Online). https://www.10xgenomics.com/support/single-cell-gene-expression/documentation/steps/library-prep/chromium-single-cell-3-reagent-kits-user-guide-v-3-1-chemistry.

2. Dissecting cellular heterogeneity using single-cell RNA sequencing;Choi;Mol. Cells,2019

3. DoubletDecon: deconvoluting doublets from single-cell RNA-sequencing data;Depasquale;Cell Rep.,2019

4. Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender;Fleming;Nat. Methods,2023

5. Single cell and spatial transcriptomics analysis of kidney double negative T lymphocytes in normal and ischemic mouse kidneys;Gharaie;Sci. Rep.,2023

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