Optimization of the Omni-ATAC protocol to chromatin accessibility profiling in snap-frozen rat adipose and muscle tissues-Reference-Cited by-同舟云学术

Optimization of the Omni-ATAC protocol to chromatin accessibility profiling in snap-frozen rat adipose and muscle tissues

Published:2022 Issue: Volume:9 Page:101681
ISSN:2215-0161
Container-title:MethodsX
language:en
Short-container-title:MethodsX

Author:

Nair Venugopalan D.,Vasoya Mital,Nair Vishnu^ORCID,Smith Gregory R.^ORCID,Pincas Hanna,Ge Yongchao^ORCID,Douglas Collin M.^ORCID,Esser Karyn A.^ORCID,Sealfon Stuart C.^ORCID

Publisher

Elsevier BV

Subject

Medical Laboratory Technology,Clinical Biochemistry

Reference19 articles.

1. ATAC-seq: a method for assaying chromatin accessibility genome-wide;Buenrostro;Curr. Protocols Mol. Biol.,2015

2. An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues;Corces;Nat. Methods,2017

3. Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle;Nair;Genomics,2021

4. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position;Buenrostro;Nat. Methods,2013

5. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition;Adey;Genome Biol.,2010

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