Sensitivity analysis and efficient method for identifying optimal spaced seeds-Reference-Cited by-同舟云学术

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Sensitivity analysis and efficient method for identifying optimal spaced seeds

Published:2004-02 Issue:1 Volume:68 Page:22-40
ISSN:0022-0000
Container-title:Journal of Computer and System Sciences
language:en
Short-container-title:Journal of Computer and System Sciences

Author:

Choi Kwok Pui,Zhang Louxin

Publisher

Elsevier BV

Subject

Applied Mathematics,Computational Theory and Mathematics,Computer Networks and Communications,Theoretical Computer Science

Reference23 articles.

1. Basic local alignment search tool;Altschul;J. Mol. Biol.,1990

2. Gapped Blast and Psi-Blast;Altschul;Nucleic Acids Res.,1997

3. Runs and Scans with Applications;Balakrishnan,2002

4. A measure of the similarity of sets of sequences not requiring sequence alignment;Blaisdell;Proc. Natl. Acad. Sci. USA,1986

5. Efficient large-scale sequence comparison by locality-sensitive hashing;Buhler;Bioinformatics,2001

Cited by 46 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Effects of spaced k-mers on alignment-free genotyping;Bioinformatics;2023-06-01

2. Aligning distant sequences to graphs using long seed sketches;Genome Research;2023-04-18

3. Global, highly specific and fast filtering of alignment seeds;BMC Bioinformatics;2022-06-10

4. Global, Highly Specific and Fast Filtering of Alignment Seeds;2020-05-03

5. Superiority and Complexity of the Spaced Seeds;Encyclopedia of Algorithms;2016

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