Designing seeds for similarity search in genomic DNA-Reference-Cited by-同舟云学术

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Designing seeds for similarity search in genomic DNA

Published:2005-05 Issue:3 Volume:70 Page:342-363
ISSN:0022-0000
Container-title:Journal of Computer and System Sciences
language:en
Short-container-title:Journal of Computer and System Sciences

Author:

Buhler Jeremy,Keich Uri,Sun Yanni

Publisher

Elsevier BV

Subject

Applied Mathematics,Computational Theory and Mathematics,Computer Networks and Communications,Theoretical Computer Science

Reference43 articles.

1. Efficient string matching;Aho;Commun. ACM,1975

2. Local alignment statistics;Altschul;Methods,1996

3. Basic local alignment search tool;Altschul;J. Mol. Biol.,1990

4. Gapped BLAST and PSI-BLAST;Altschul;Nucleic Acids Res.,1997

5. Optimal spaced seeds for hidden markov models, with applications to homologous coding regions;Brejova,2003

Cited by 44 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Global, highly specific and fast filtering of alignment seeds;BMC Bioinformatics;2022-06-10

2. Effective sequence similarity detection with strobemers;Genome Research;2021-10-19

3. Strobemers: an alternative to k-mers for sequence comparison;2021-01-29

4. Extraction of long k-mers using spaced seeds;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2021

5. ALeS: adaptive-length spaced-seed design;Bioinformatics;2020-12-07

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