A randomized Numerical Aligner (rNA)-Reference-Cited by-同舟云学术

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A randomized Numerical Aligner (rNA)

Published:2012-11 Issue:6 Volume:78 Page:1868-1882
ISSN:0022-0000
Container-title:Journal of Computer and System Sciences
language:en
Short-container-title:Journal of Computer and System Sciences

Author:

Policriti Alberto,Tomescu Alexandru I.,Vezzi Francesco

Publisher

Elsevier BV

Subject

Applied Mathematics,Computational Theory and Mathematics,Computer Networks and Communications,Theoretical Computer Science

Reference33 articles.

1. Gapped BLAST and PSI–BLAST: a new generation of protein database search programs;Altschul;Nucleic Acids Res.,1997

2. BLAT—The BLAST-like alignment tool;Kent;Genome Res.,2002

3. Fast pattern matching in strings;Knuth;SIAM J. Comput.,1977

4. A fast string searching algorithm;Boyer;Commun. ACM,1977

5. Efficient randomized pattern-matching algorithms;Karp;IBM J. Res. Develop.,1987

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1. Lightweight Fingerprints for Fast Approximate Keyword Matching Using Bitwise Operations;Computing and Informatics;2019

2. Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2;BMC Bioinformatics;2016-02

3. Fast randomized approximate string matching with succinct hash data structures;BMC Bioinformatics;2015-06-01

4. Hashing and Indexing: Succinct DataStructures and Smoothed Analysis;Algorithms and Computation;2014

5. GapFiller: a de novo assembly approach to fill the gap within paired reads;BMC Bioinformatics;2012-09

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