Protocol for inferring epithelial-to-mesenchymal transition trajectories from single-cell RNA sequencing data using R-Reference-Cited by-同舟云学术

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Protocol for inferring epithelial-to-mesenchymal transition trajectories from single-cell RNA sequencing data using R

Published:2024-03 Issue:1 Volume:5 Page:102819
ISSN:2666-1667
Container-title:STAR Protocols
language:en
Short-container-title:STAR Protocols

Author:

Najafi Annice,Jolly Mohit Kumar,George Jason T.

Funder

Science and Engineering Research Board

University of Texas MD Anderson Cancer Center

Texas A and M University

Cancer Prevention and Research Institute of Texas

Department of Science and Technology, Ministry of Science and Technology, India

Publisher

Elsevier BV

Reference12 articles.

1. EMT in cancer;Brabletz;Nat. Rev. Cancer,2018

2. Comparative study of transcriptomics-based scoring metrics for the epithelial-hybrid-mesenchymal spectrum;Chakraborty;Front. Bioeng. Biotechnol.,2020

3. Survival outcomes in cancer patients predicted by a partial EMT gene expression scoring metric;George;Cancer Res.,2017

4. Implications of the hybrid epithelial/mesenchymal phenotype in metastasis;Jolly;Front. Oncol.,2015

5. Context specificity of the EMT transcriptional response;Cook;Nat. Commun.,2020

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