Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2-Reference-Cited by-同舟云学术

Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2

Published:2016-05 Issue: Volume:33 Page:45-50
ISSN:1574-9541
Container-title:Ecological Informatics
language:en
Short-container-title:Ecological Informatics

Author:

Bengtsson-Palme Johan^ORCID,Thorell Kaisa,Wurzbacher Christian,Sjöling Åsa,Nilsson R. Henrik

Funder

Swedish Research Council for Environment, Agriculture and Spatial Planning

Publisher

Elsevier BV

Subject

Applied Mathematics,Computational Theory and Mathematics,Computer Science Applications,Ecological Modeling,Modeling and Simulation,Ecology,Ecology, Evolution, Behavior and Systematics

Reference45 articles.

1. Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets;Bengtsson;Antonie Van Leeuwenhoek,2011

2. Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets;Bengtsson;Res. Microbiol.,2012

3. Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India;Bengtsson-Palme;Front. Microbiol.,2014

4. The human gut microbiome as a transporter of antibiotic resistance genes between continents;Bengtsson-Palme;Antimicrob. Agents Chemother.,2015

5. Metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data;Bengtsson-Palme;Mol. Ecol. Resour.,2015

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