Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization-Reference-Cited by-同舟云学术

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Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization

Published:2020-11 Issue: Volume:745 Page:140948
ISSN:0048-9697
Container-title:Science of The Total Environment
language:en
Short-container-title:Science of The Total Environment

Author:

Bailet Bonnie,Apothéloz-Perret-Gentil Laure,Baričević Ana,Chonova Teofana,Franc Alain,Frigerio Jean-Marc,Kelly Martyn,Mora Demetrio,Pfannkuchen Martin,Proft Sebastian,Ramon Mathieu,Vasselon Valentin,Zimmermann Jonas,Kahlert Maria

Funder

Stiftelsen Oscar och Lili Lamms Minne

Swedish Agency for Marine and Water Management

Federal Ministry of Education and Research

Croatian Science Foundation

COST

Publisher

Elsevier BV

Subject

Pollution,Waste Management and Disposal,Environmental Chemistry,Environmental Engineering

Reference74 articles.

1. Scrutinizing key steps for reliable metabarcoding of environmental samples;Alberdi;Methods Ecol. Evol.,2018

2. Taxonomy-free molecular diatom index for high-throughput eDNA biomonitoring;Apothéloz-Perret-Gentil;Mol. Ecol. Resour.,2017

3. Molecular versus morphological data for benthic diatoms biomonitoring in Northern Europe freshwater and consequences for ecological status;Bailet;Metabarcoding and Metagenomics,2019

4. Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes;Bálint;FEMS Microbiol. Rev.,2016

5. obitools: a unix-inspired software package for DNA metabarcoding;Boyer;Mol. Ecol. Resour.,2016

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