1. Baptista, A.M., 2006. “Corie: The First Decade of a Coastal Margin Collaborative Observatory,” in Oceans ’06 MTS/IEEE, Boston.
2. A Cross-Scale Model for 3D baroclinic Circulation in Estuary-Plume-Shelf Systems: II. Application to the Columbia River;Baptista;Continental Shelf Research,2005
3. Bottom, D.L., Simenstad, C.A., Burke, J., Baptista, A.M., Jay, D.A., Jones, K.K., Casillas, E., Schiewe, M.H., 2005. Salmon at River's End. The Role of the Estuary in the Decline and Recovery of Columbia River Salmon”, NOAA Technical Memorandum NMFS-NWFSC-68, US Department Commer.
4. Burla, M., Baptista, A.M., Casillas, E., Williams, J.G., submitted. The Influence of the Columbia River Plume on the survival of steelhead (Oncorhynchus Mykiss) and Chinook Salmon (O. Tshawytscha): a numerical exploration. Canadian Journal of Fisheries and Aquatic Science.
5. Burla, M., Baptista, A.M., Zhang, Y.-L., Casillas, E., Bottom, D.L., Simenstad, S.A., 2007. Salmon Habitat Opportunity in the Columbia River Estuary: Modeling the Physical Environment to Inform Management Decisions, in Coastal Zone ‘07, Portland, OR.