A comprehensive evaluation of factors affecting the accuracy of pig genotype imputation using a single or multi-breed reference population-Reference-Cited by-同舟云学术

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A comprehensive evaluation of factors affecting the accuracy of pig genotype imputation using a single or multi-breed reference population

Published:2022-02 Issue:2 Volume:21 Page:486-495
ISSN:2095-3119
Container-title:Journal of Integrative Agriculture
language:en
Short-container-title:Journal of Integrative Agriculture

Author:

Kai-li ZHANG,Xia PENG,Sai-xian ZHANG,Hui-wen ZHAN,Jia-hui LU,Sheng-song XIE,Shu-hong ZHAO,Xin-yun LI,Yun-long MA

Publisher

Elsevier BV

Subject

Plant Science,Agronomy and Crop Science,Animal Science and Zoology,Food Animals,Ecology,Biochemistry,Food Science

Reference40 articles.

1. Imputation to whole-genome sequence using multiple pig populations and its use in genome-wide association studies;van den Berg;Genetics Selection Evolution,2019

2. Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle;van Binsbergen;Genetics Selection Evolution,2014

3. Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy;Bouwman;BMC Genetics,2014

4. Genotype imputation with millions of reference samples;Browning;American Journal of Human Genetics,2016

5. Multilocus Association mapping using variable-length markov chains;Browning;American Journal of Human Genetics,2006

Cited by 7 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Effects of reference population size and structure on genomic prediction of maternal traits in two pig lines using whole‐genome sequence‐, high‐density‐ and combined annotation‐dependent depletion genotypes;Journal of Animal Breeding and Genetics;2024-04-02

2. Short communication: Accuracy of whole-genome sequence imputation in Angus cattle using within-breed and multi breed reference populations;animal;2024-03

3. AGIDB: a versatile database for genotype imputation and variant decoding across species;Nucleic Acids Research;2023-10-27

4. A Pipeline for Phasing and Genotype Imputation on Mixed Human Data (Parents-Offspring Trios and Unrelated Subjects) by Reviewing Current Methods and Software;Life;2022-12-05

5. An autoencoder-based deep learning method for genotype imputation;Frontiers in Artificial Intelligence;2022-11-03

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