AlloRep: A Repository of Sequence, Structural and Mutagenesis Data for the LacI/GalR Transcription Regulators-Reference-Cited by-同舟云学术

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AlloRep: A Repository of Sequence, Structural and Mutagenesis Data for the LacI/GalR Transcription Regulators

Published:2016-02 Issue:4 Volume:428 Page:671-678
ISSN:0022-2836
Container-title:Journal of Molecular Biology
language:en
Short-container-title:Journal of Molecular Biology

Author:

Sousa Filipa L.,Parente Daniel J.,Shis David L.,Hessman Jacob A.,Chazelle Allen,Bennett Matthew R.,Teichmann Sarah A.,Swint-Kruse Liskin

Funder

Fundação para a Ciência e Tecnologia

National Institutes of Health

University of Kansas Medical Center Biomedical Research Training Program

National Science Foundation

National Institute of General Medical Sciences Mathematical Biology Program

Robert A. Welch Foundation

Publisher

Elsevier BV

Subject

Molecular Biology,Structural Biology

Reference50 articles.

1. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios;Pei;Bioinformatics,2006

2. Determinants, discriminants, conserved residues—A heuristic approach to detection of functional divergence in protein families;Bharatham;PLoS ONE,2011

3. An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies;Mazin;Algorithms Mol. Biol.,2010

4. The use of orthologous sequences to predict the impact of amino acid substitutions on protein function;Marini;PLoS Genet.,2010

5. Bi-directional SIFT predicts a subset of activating mutations;Lee;PLoS ONE,2009

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2. Rheostats, toggles, and neutrals, Oh my! A new framework for understanding how amino acid changes modulate protein function;Journal of Biological Chemistry;2024-03

3. Simulated pressure changes in LacI suggest a link between hydration and functional conformational changes;Biophysical Chemistry;2024-01

4. PYK-SubstitutionOME: an integrated database containing allosteric coupling, ligand affinity and mutational, structural, pathological, bioinformatic and computational information about pyruvate kinase isozymes;Database;2023-01-01

5. Deep representation learning improves prediction of LacI-mediated transcriptional repression;Proceedings of the National Academy of Sciences;2021-06-29

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