Inadequacy of Evolutionary Profiles Vis-a-vis Single Sequences in Predicting Transient DNA-Binding Sites in Proteins-Reference-Cited by-同舟云学术

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Inadequacy of Evolutionary Profiles Vis-a-vis Single Sequences in Predicting Transient DNA-Binding Sites in Proteins

Published:2022-07 Issue:13 Volume:434 Page:167640
ISSN:0022-2836
Container-title:Journal of Molecular Biology
language:en
Short-container-title:Journal of Molecular Biology

Author:

Arya Ajay,Mary Varghese Dana,Kumar Verma Ajay,Ahmad Shandar

Funder

Department of Biotechnology, Ministry of Science and Technology, India

Department of Science and Technology, Ministry of Science and Technology, India

Indian Council of Medical Research

Publisher

Elsevier BV

Subject

Molecular Biology,Structural Biology

Reference27 articles.

1. Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information;Ahmad;Bioinformatics,2004

2. PSSM-based prediction of DNA binding sites in proteins;Ahmad;BMC Bioinf.,2005

3. DNABind: A hybrid algorithm for structure-based prediction of DNA-binding residues by combining machine learning-and template-based approaches;Liu;Proteins: Structure, Function, and Bioinformatics,2013

4. StackDPPred: a stacking based prediction of DNA-binding protein from sequence;Mishra;Bioinformatics,2019

5. DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins;Hwang;Bioinformatics,2007

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information;Bioinformatics;2023-10-01

2. Analysis and Prediction of Pathogen Nucleic Acid Specificity for Toll-like Receptors in Vertebrates;Journal of Molecular Biology;2023-09

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