Empirical Analysis of Protein Insertions and Deletions Determining Parameters for the Correct Placement of Gaps in Protein Sequence Alignments

Author:

Chang Mike S.S.,Benner Steven A.

Publisher

Elsevier BV

Subject

Molecular Biology,Structural Biology

Reference41 articles.

1. A general method applicable to the search for similarities in the amino acid sequence of two proteins;Needleman;J. Mol. Biol.,1970

2. Identification of common molecular subsequences;Smith;J. Mol. Biol.,1981

3. Dayhoff, M. O. & National Biomedical Research Foundation (1978). A model for evolutionary change in proteins. Atlas of Protein Sequence and Structure, vol. 5, suppl. 3, p. 345. National Biomedical Research Foundation, Silver Spring, MD.

4. Exhaustive matching of the entire protein sequence database;Gonnet;Science,1992

5. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice;Thompson;Nucl. Acids Res.,1994

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