Integrating Cross-Linking Experiments with Ab Initio Protein–Protein Docking-Reference-Cited by-同舟云学术

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Integrating Cross-Linking Experiments with Ab Initio Protein–Protein Docking

Published:2018-06 Issue:12 Volume:430 Page:1814-1828
ISSN:0022-2836
Container-title:Journal of Molecular Biology
language:en
Short-container-title:Journal of Molecular Biology

Author:

Vreven Thom,Schweppe Devin K.,Chavez Juan D.,Weisbrod Chad R.,Shibata Sayaka,Zheng Chunxiang,Bruce James E.,Weng Zhiping

Funder

National Institutes of Health

Publisher

Elsevier BV

Subject

Molecular Biology,Structural Biology

Reference62 articles.

1. Protein–protein interaction networks: the puzzling riches;Wodak;Curr. Opin. Struct. Biol.,2013

2. Integrating diverse data for structure determination of macromolecular assemblies;Alber;Annu. Rev. Biochem.,2008

3. Performance of ZDOCK in CAPRI rounds 20–26;Vreven;Proteins,2013

4. Performance of ZDOCK and ZRANK in CAPRI rounds 13–19;Hwang;Proteins,2010

5. Docking, scoring, and affinity prediction in CAPRI;Lensink;Proteins,2013

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1. Modeling Flexible Protein Structure With AlphaFold2 and Crosslinking Mass Spectrometry;Molecular & Cellular Proteomics;2024-03

2. Assessment of Two Restraint Potentials for Coarse-Grained Chemical-Cross-Link-Assisted Modeling of Protein Structures;Journal of Chemical Information and Modeling;2024-02-12

3. Hybrid structural modeling of alloantibody binding to human leukocyte antigen with rapid and reproducible cross-linking mass spectrometry;Cell Reports Methods;2023-09

4. Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein Complexes;Annual Review of Biophysics;2023-05-09

5. Computational Protein–Protein Docking;Protein Interactions;2022-11-18

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