How B-DNA Dynamics Decipher Sequence-Selective Protein Recognition-Reference-Cited by-同舟云学术

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How B-DNA Dynamics Decipher Sequence-Selective Protein Recognition

Published:2019-09 Issue:19 Volume:431 Page:3845-3859
ISSN:0022-2836
Container-title:Journal of Molecular Biology
language:en
Short-container-title:Journal of Molecular Biology

Author:

Battistini Federica,Hospital Adam,Buitrago Diana,Gallego Diego,Dans Pablo D.,Gelpí Josep Lluis,Orozco Modesto

Funder

Spanish Ministry of Science

Catalan Government

Instituto de Salud Carlos III–Instituto Nacional de Bioinformática

European Union

Horizon 2020

Fondo Europeo de Desarrollo Regional

Government of Spain

Publisher

Elsevier BV

Subject

Molecular Biology,Structural Biology

Reference74 articles.

1. Origins of specificity in protein–DNA recognition;Rohs;Annu. Rev. Biochem.,2010

2. Disordered tails of homeodomains facilitate DNA recognition by providing a trade-off between folding and specific binding;Tóth-Petróczy;J. Am. Chem. Soc.,2009

3. Specific minor groove solvation is a crucial determinant of DNA binding site recognition;Harris;Nucleic Acids Res.,2014

4. Entropy and dynamics of water in hydration layers of a bilayer;Debnath;J. Chem. Phys.,2010

5. Conformational selection or induced fit: a flux description of reaction mechanism;Hammes;Proc. Natl. Acad. Sci. U. S. A.,2009

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2. Systematic Comparison of Atomistic Force Fields for the Mechanical Properties of Double-Stranded DNA;Journal of Chemical Theory and Computation;2024-02-27

3. The impact of sequence periodicity on DNA mechanics: investigating the origin of A-tract's curvature;Nanoscale;2024

4. Incorporating Sequence-Dependent DNA Shape and Dynamics into Transcriptome Data Analysis;Methods in Molecular Biology;2024

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