Comparison of different variant sequence types coupled with decoy generation methods used in concatenated target-decoy database searches for proteogenomic research-Reference-Cited by-同舟云学术

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Comparison of different variant sequence types coupled with decoy generation methods used in concatenated target-decoy database searches for proteogenomic research

Published:2021-01 Issue: Volume:231 Page:104021
ISSN:1874-3919
Container-title:Journal of Proteomics
language:en
Short-container-title:Journal of Proteomics

Author:

Choong Wai-Kok,Sung Ting-Yi

Funder

Next-generation Pathway of Taiwan Cancer Precision Medicine Program

Ministry of Science and Technology of Taiwan

Publisher

Elsevier BV

Subject

Biochemistry,Biophysics

Reference25 articles.

1. Proteogenomics: concepts, applications and computational strategies;Nesvizhskii;Nat. Methods,2014

2. Comet: an open-source MS/MS sequence database search tool;Eng;Proteomics,2013

3. Detection and validation of non-synonymous coding SNPs from orthogonal analysis of shotgun proteomics data;Bunger;J. Proteome Res.,2007

4. A mass spectrometry-friendly database for cSNP identification;Schandorff;Nat. Methods,2007

5. Integrated proteogenomic characterization of HBV-related hepatocellular carcinoma;Gao;Cell,2019

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. False discovery rate: the Achilles’ heel of proteogenomics;Briefings in Bioinformatics;2022-05-09

2. Multiaspect Examinations of Possible Alternative Mappings of Identified Variant Peptides: A Case Study on the HEK293 Cell Line;ACS Omega;2022-05-02

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