Formal Biochemical Space with Semantics in Kappa and BNGL

Author:

Děd T.,Šafránek D.,Troják M.,Klement M.,Šalagovič J.,Brim L.

Publisher

Elsevier BV

Subject

General Computer Science,Theoretical Computer Science

Reference18 articles.

1. Compact representation of photosynthesis dynamics by rule-based models;Brim;Electronic Notes in Theoretical Computer Science,2015

2. Bio-pepa: A framework for the modelling and analysis of biological systems;Ciocchetta;Theoretical Computer Science,2009

3. Abstract interpretation of cellular signalling networks;Danos,2008

4. Formal molecular biology;Danos;Theor. Comput. Sci.,2004

5. The blenx language: A tutorial;Dematté,2008

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1. Accessible Pattern Analyses in Kappa Models;Symbolic Approaches to Modeling and Analysis of Biological Systems;2023-08-04

2. Executable biochemical space for specification and analysis of biochemical systems;PLOS ONE;2020-09-11

3. Executable Biochemical Space for Specification and Analysis of Biochemical Systems;Electronic Notes in Theoretical Computer Science;2020-09

4. eBCSgen: A Software Tool for Biochemical Space Language;Computational Methods in Systems Biology;2020

5. TRuML;Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics;2017-08-20

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