Some string matching problems from Bioinformatics which still need better solutions-Reference-Cited by-同舟云学术

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Some string matching problems from Bioinformatics which still need better solutions

Published:2004-03 Issue:1 Volume:2 Page:3-15
ISSN:1570-8667
Container-title:Journal of Discrete Algorithms
language:en
Short-container-title:Journal of Discrete Algorithms

Author:

Gonnet Gaston H.

Publisher

Elsevier BV

Subject

Computational Theory and Mathematics,Discrete Mathematics and Combinatorics,Theoretical Computer Science

Reference14 articles.

1. String searching algorithms revisited;Baeza-Yates,1989

2. A. Bairoch, Prosite: Database of protein families and domains, Publicly available database

3. Applying motif and profile searches;Bork;Methods Enzymology,1996

4. A fast string searching algorithm;Boyer;Comm. ACM,1977

5. A generalized profile syntax for biomolecular sequences motifs and its function in automatic sequence interpretation;Bucher,1994

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1. ISMatch: A real-time hardware accelerator for inexact string matching of DNA sequences on FPGA;Microprocessors and Microsystems;2023-03

2. sRNA Profiler: A User-Focused Interface for Small RNA Mapping and Profiling;Cells;2021-07-13

3. Fast Algorithm for Vernier Search of Long Repeats in DNA Sequences with Bounded Error Density;Algorithms for Computational Biology;2018

4. Fast profile matching algorithms — A survey;Theoretical Computer Science;2008-05

5. Fast index based algorithms and software for matching position specific scoring matrices;BMC Bioinformatics;2006-08-24

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