A large-scale analysis of codon usage bias in 4868 bacterial genomes shows association of codon adaptation index with GC content, protein functional domains and bacterial phenotypes

Author:

Masłowska-Górnicz Anna,van den Bosch Melanie R.M.,Saccenti EdoardoORCID,Suarez-Diez Maria

Publisher

Elsevier BV

Subject

Genetics,Molecular Biology,Biochemistry,Structural Biology,Biophysics

Reference72 articles.

1. “Two out of three”: an alternative method for codon reading;Lagerkvist;Proc. Natl. Acad. Sci.,1978

2. Codon usage in bacteria: correlation with gene expressivity;Gouy;Nucleic Acids Res.,1982

3. Codon catalog usage and the genome hypothesis;Grantham;Nucleic Acids Res.,1980

4. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution;Drummond;Cell,2008

5. Examination of the tRNA adaptation index as a predictor of protein expression levels;Man,2005

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