Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index-Reference-Cited by-同舟云学术

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Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

Published:2018-08 Issue:2 Volume:7 Page:201-207.e4
ISSN:2405-4712
Container-title:Cell Systems
language:en
Short-container-title:Cell Systems

Author:

Pandey Prashant,Almodaresi Fatemeh,Bender Michael A.,Ferdman Michael,Johnson Rob,Patro Rob

Funder

Sandia National Laboratories

Publisher

Elsevier BV

Subject

Cell Biology,Histology,Pathology and Forensic Medicine

Reference29 articles.

1. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers;Marçais;Bioinformatics,2011

2. Rainbowfish: a succinct colored de Bruijn graph representation;Almodaresi,2017

3. Basic local alignment search tool;Altschul;J. Mol. Biol.,1990

4. Fully dynamic de Bruijn graphs;Belazzougui,2016

5. Don’t thrash: how to cache your hash on flash;Bender;Proceedings VLDB Endowment,2012

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