A parallel strategy for biological sequence alignment in restricted memory space-Reference-Cited by-同舟云学术

A parallel strategy for biological sequence alignment in restricted memory space

Published:2008-04 Issue:4 Volume:68 Page:548-561
ISSN:0743-7315
Container-title:Journal of Parallel and Distributed Computing
language:en
Short-container-title:Journal of Parallel and Distributed Computing

Author:

Batista Rodolfo Bezerra,Boukerche Azzedine,de Melo Alba Cristina Magalhaes Alves

Publisher

Elsevier BV

Subject

Artificial Intelligence,Computer Networks and Communications,Hardware and Architecture,Theoretical Computer Science,Software

Reference23 articles.

1. Optimal sequence alignment using affine gap costs;Altschul;Bull. Math. Biol.,1986

2. Basic local alignment search tool;Altschul;J. Mol. Biol.,1990

3. Parallel biological sequence comparison using prefix computations;Aluru;J. Parallel Distrib. Comput.,2003

4. A. Boukerche, A.C.M.A. Melo, M. Ayala-Rincon, T.M. Santana, Parallel Smith–Waterman algorithm for local DNA comparison in a cluster of workstations, in: 4th International Workshop on Experimental and Efficient Algorithms, Lecture Notes in Computer Science, vol. 3503, 2005, pp. 464-475.

5. Sequence alignment using fastLSA;Charter,2000

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