Accelerating BWA Aligner Using Multistage Data Parallelization on Multicore and Manycore Architectures-Reference-Cited by-同舟云学术

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Accelerating BWA Aligner Using Multistage Data Parallelization on Multicore and Manycore Architectures

Published:2016 Issue: Volume:80 Page:2438-2442
ISSN:1877-0509
Container-title:Procedia Computer Science
language:en
Short-container-title:Procedia Computer Science

Author:

Chen Shaolong,Senar Miquel A.

Publisher

Elsevier BV

Subject

General Engineering

Reference6 articles.

1. ‘Big data’, Hadoop and cloud computing in genomics;O’Driscoll;Journal of biomedical informatics,2013

2. Cui Y, Liao X, Zhu X, et al. mBWA: A massively parallel sequence reads aligner. The 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014). Springer International Publishing, 2014: 113-120.

3. bwa-aln-xeon-phi-0.5.10. https://github.com/intel-mic/bwa-aln-xeon-phi-0.5.10.

4. Genome annotation: from sequence to biology;Stein;Nature reviews genetics,2001

5. On the Performance of BWA on NUMA Architectures;Lenis;Proc. of IEEE Int. Conf. on Trustcom/BigDataSE/ISPA,2015

Cited by 3 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. SWARAM;ACM Transactions on Embedded Computing Systems;2019-10-31

2. Exploring efficient data parallelism for genome read mapping on multicore and manycore architectures;Parallel Computing;2019-09

3. Improving Performance of Genomic Aligners on Intel Xeon Phi-Based Architectures;2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW);2018-05

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