Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome
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Published:2023-08
Issue:8
Volume:3
Page:100543
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ISSN:2667-2375
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Container-title:Cell Reports Methods
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language:en
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Short-container-title:Cell Reports Methods
Author:
Lee HoJoon, Greer Stephanie U., Pavlichin Dmitri S., Zhou Bo, Urban Alexander E., Weissman Tsachy, Ji Hanlee P.ORCID, Liao Wen-Wei, Asri Mobin, Ebler Jana, Doerr Daniel, Haukness Marina, Hickey Glenn, Lu Shuangjia, Lucas Julian K., Monlong Jean, Abel Haley J., Buonaiuto Silvia, Chang Xian H., Cheng Haoyu, Chu Justin, Colonna Vincenza, Eizenga Jordan M., Feng Xiaowen, Fischer Christian, Fulton Robert S., Garg Shilpa, Groza Cristian, Guarracino Andrea, Harvey William T., Heumos Simon, Howe Kerstin, Jain Miten, Lu Tsung-Yu, Markello Charles, Martin Fergal J., Mitchell Matthew W., Munson Katherine M., Mwaniki Moses Njagi, Novak Adam M., Olsen Hugh E., Pesout Trevor, Porubsky David, Prins Pjotr, Sibbesen Jonas A., Tomlinson Chad, Villani Flavia, Vollger Mitchell R., Antonacci-Fulton Lucinda L., Baid Gunjan, Baker Carl A., Belyaeva Anastasiya, Billis Konstantinos, Carroll Andrew, Chang Pi-Chuan, Cody Sarah, Cook Daniel E., Cornejo Omar E., Diekhans Mark, Ebert Peter, Fairley Susan, Fedrigo Olivier, Felsenfeld Adam L., Formenti Giulio, Frankish Adam, Gao Yan, Giron Carlos Garcia, Green Richard E., Haggerty Leanne, Hoekzema Kendra, Hourlier Thibaut, Ji Hanlee P., Kolesnikov Alexey, Korbel Jan O., Kordosky Jennifer, Lee HoJoon, Lewis Alexandra P., Magalhães Hugo, Marco-Sola Santiago, Marijon Pierre, McDaniel Jennifer, Mountcastle Jacquelyn, Nattestad Maria, Olson Nathan D., Puiu Daniela, Regier Allison A., Rhie Arang, Sacco Samuel, Sanders Ashley D., Schneider Valerie A., Schultz Baergen I., Shafin Kishwar, Sirén Jouni, Smith Michael W., Sofia Heidi J., Abou Tayoun Ahmad N., Thibaud-Nissen Françoise, Tricomi Francesca Floriana, Wagner Justin, Wood Jonathan M.D., Zimin Aleksey V., Popejoy Alice B., Bourque Guillaume, Chaisson Mark J.P., Flicek Paul, Phillippy Adam M., Zook Justin M., Eichler Evan E., Haussler David, Jarvis Erich D., Miga Karen H., Wang Ting, Garrison Erik, Marschall Tobias, Hall Ira, Li Heng, Paten Benedict
Subject
Computer Science Applications,Radiology, Nuclear Medicine and imaging,Genetics,Biochemistry, Genetics and Molecular Biology (miscellaneous),Biochemistry,Biotechnology
Reference22 articles.
1. Pan-genomics in the human genome era;Sherman;Nat. Rev. Genet.,2020 2. SNP discovery using a Pangenome: has the single reference approach become obsolete?;Hurgobin;Biology,2017 3. The need for a human pangenome reference sequence;Miga;Annu. Rev. Genomics Hum. Genet.,2021 4. Automatic detection of complex structural genome variation across world populations;Zhou;bioRxiv,2023 5. The complete sequence of a human genome;Nurk;Science,2022
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