TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining

Author:

Huang Zhi,Han Zhi,Wang Resource Tongxin,Shao Wei,Xiang Shunian,Salama Paul,Rizkalla Maher,Huang Kun,Zhang Jie

Funder

NCI

Indiana University School of Medicine

Publisher

Elsevier BV

Subject

Computational Mathematics,Genetics,Molecular Biology,Biochemistry

Reference28 articles.

1. WGCNA: an R package for weighted correlation network analysis;Langfelder;BMC Bioinformatics,2008

2. Normalized ImQCM: an algorithm for detecting weak quasi-cliques in weighted graph with applications in gene co-expression module discovery in cancers;Zhang;Cancer Inform,2014

3. Functional virtual flow cytometry: a visual analytic approach for characterizing single-cell gene expression patterns;Han;Biomed Res Int,2017

4. A matrix rank based concordance index for evaluating and detecting conditional specific co-expressed gene modules;Han;BMC Genomics,2016

5. Pan-cancer analysis of frequent DNA co-methylation patterns reveals consistent epigenetic landscape changes in multiple cancers;Zhang;BMC Genomics,2017

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