γ-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic Algorithm-Reference-Cited by-同舟云学术

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γ-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic Algorithm

Published:2015-12 Issue:12 Volume:23 Page:2365-2376
ISSN:0969-2126
Container-title:Structure
language:en
Short-container-title:Structure

Author:

Pandurangan Arun Prasad,Vasishtan Daven,Alber Frank,Topf Maya

Funder

MRC

Leverhulme Trust

BBSRC

Arnold and Mabel Beckman foundation

PEW charitable trust

NIH

Publisher

Elsevier BV

Subject

Molecular Biology,Structural Biology

Reference33 articles.

1. DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes;Amir;Bioinformatics,2015

2. Protein structure prediction using mutually orthogonal Latin squares and a genetic algorithm;Arunachalam;Biochem. Biophys. Res. Commun.,2006

3. Using sculptor and situs for simultaneous assembly of atomic components into low-resolution shapes;Birmanns;J. Struct. Biol.,2011

4. Reconstruction of protein form with X-ray solution scattering and a genetic algorithm;Chacon;J. Mol. Biol.,2000

5. Single-particle cryo-EM at crystallographic resolution;Cheng;Cell,2015

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1. Integrating AlphaFold and deep learning for atomistic interpretation of cryo-EM maps;Briefings in Bioinformatics;2023-09-22

2. Application of conformational space annealing to the protein structure modeling using cryo‐EM maps;Journal of Computational Chemistry;2023-08-16

3. Integrating AlphaFold and deep learning for atomistic interpretation of cryo-EM maps;2023-02-03

4. Integrating model simulation tools andcryo‐electronmicroscopy;WIREs Computational Molecular Science;2022-11-21

5. MarkovFit: Structure Fitting for Protein Complexes in Electron Microscopy Maps Using Markov Random Field;Frontiers in Molecular Biosciences;2022-07-25

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