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Identification of key differentially expressed genes in SARS-CoV-2 using RNA-seq analysis with a systems biology approach

  • Published:2023-06 Issue: Volume:166 Page:156187
  • ISSN:1043-4666
  • Container-title:Cytokine
  • language:en
  • Short-container-title:Cytokine

Author:

Safarzadeh Arash,Mahmud Hussen Bashdar,Taheri Mohammad,Ghafouri-Fard Soudeh,Hajiesmaeili Mohammadreza

Publisher

Elsevier BV

Subject

Molecular Biology,Hematology,Biochemistry,Immunology,Immunology and Allergy

Reference19 articles.

1. M. Taheri, L.M. Rad, B.M. Hussen, F. Nicknafs, A. Sayad, S. Ghafouri-Fard, Evaluation of expression of VDR-associated lncRNAs in COVID-19 patients, BMC Infect. Dis. 21(1) (2021 Jun 19) 588. PubMed PMID: 34147082. Pubmed Central PMCID: PMC8214050. Epub 2021/06/2eng.

2. M. Samsami, A. Fatemi, R. Jalili Khoshnoud, K. Kohansal, B.M. Hussen, S. Soghala et al., Abnormal transcript levels of cytokines among Iranian COVID-19 patients, J. Mol. Neurosci. MN. 72(1) (2022 Jan) 27–36. PubMed PMID: 34855144. Pubmed Central PMCID: PMC8636578. Epub 2021/12/03. eng.

3. R. Wargodsky, P. Dela Cruz, J. LaFleur, D. Yamane, J.S. Kim, I. Benjenk et al., RNA Sequencing in COVID-19 patients identifies neutrophil activation biomarkers as a promising diagnostic platform for infections, Plos One 17(1) (2022) e0261679. PubMed PMID: 35081105. Pubmed Central PMCID: PMC8791486 diagnostics company developing RNA biomarkers for various diseases, including coronary artery disease and internal infections. TM is seeking patent protection for technology related to the current studies. This does not alter our adherence to PLOS ONE policies on sharing data and materials. The other authors declare there are no competing interests. Epub 2022/01/27. eng.

4. A. Bass, Y. Liu, S. Dakshanamurthy, Single-cell and bulk RNASeq profiling of COVID-19 patients reveal immune and inflammatory mechanisms of infection-induced organ damage. Viruses 13(12) (2021 Dec 2) PubMed PMID: 34960687. Pubmed Central PMCID: PMC8706409. Epub 2021/12/29. eng.

5. A.R. Daamen, P. Bachali, K.A. Owen, K.M. Kingsmore, E.L. Hubbard, A.C. Labonte et al., Comprehensive transcriptomic analysis of COVID-19 blood, lung, and airway, Sci. Rep. 11(1) (2021 Mar 29) 7052. PubMed PMID: 33782412. Pubmed Central PMCID: PMC8007747. Epub 2021/03/31. eng.

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