Evaluation of nine popular de novo assemblers in microbial genome assembly-Reference-Cited by-同舟云学术

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Evaluation of nine popular de novo assemblers in microbial genome assembly

Published:2017-12 Issue: Volume:143 Page:32-37
ISSN:0167-7012
Container-title:Journal of Microbiological Methods
language:en
Short-container-title:Journal of Microbiological Methods

Author:

Forouzan Esmaeil,Maleki Masoumeh Sadat Mousavi,Karkhane Ali Asghar,Yakhchali Bagher

Funder

Iran National Science Foundation

Publisher

Elsevier BV

Subject

Microbiology (medical),Molecular Biology,Microbiology

Reference27 articles.

1. Next-generation DNA sequencing techniques;Ansorge;New Biotechnol.,2009

2. SPAdes: a new genome assembly algorithm and its applications to single-cell se-quencing;Bankevich;J. Comput. Biol.,2012

3. Ray meta: scalable de novo metagenome assembly and profiling;Boisvert;Genome Biol.,2012

4. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species;Bradnam;GigaScience,2013

5. The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host–cell interaction genes;Cho;Proc. Natl. Acad. Sci. U. S. A.,2007

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